Module 131 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	0.0000000000044	0.0000000000063	86	27	20160204

Motifs

Motif 1
	e-value: 0.0000000000044
Motif 2
	e-value: 0.0000000000063

Module Plots

Members

MSMEG_6096 Type III pantothenate kinase (EC 2.7.1.33) (PanK-III) (Pantothenic acid kinase)	MSMEG_3791 50S ribosomal protein L20
MSMEG_4575 Uncharacterized protein	MSMEG_3790 23S rRNA methyltransferase TsnR (EC 2.1.1.34) (RNA methyltransferase, TrmH family protein)
MSMEG_1869 Uncharacterized protein	MSMEG_6104 GTP cyclohydrolase 1 (EC 3.5.4.16) (GTP cyclohydrolase I)
MSMEG_6466 Aquaporin Z	MSMEG_3795 Uncharacterized protein
MSMEG_1364 50S ribosomal protein L10	MSMEG_3794 Uncharacterized protein
MSMEG_1365 50S ribosomal protein L7/L12	MSMEG_1588 Uncharacterized protein
MSMEG_0157 Oxalyl-CoA decarboxylase (EC 4.1.1.8) (Oxalyl-CoA decarboxylase OxcA)	MSMEG_6101 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)
MSMEG_4658 Sugar ABC transporter substrate-binding protein	MSMEG_1299 2OG-Fe(II) oxygenase (Oxidoreductase, 2OG-Fe(II) oxygenase family protein)
MSMEG_3327 Uncharacterized protein	MSMEG_6102 7,8-dihydroneopterin aldolase (EC 4.1.2.25)
MSMEG_4023 Oxidoreductase (Pyridine nucleotide-disulfide oxidoreductase dimerization region) (EC 1.-.-.-)	MSMEG_3833 30S ribosomal protein S1
MSMEG_4657 ABC transporter membrane protein (ABC transporter sugar permease)	MSMEG_5006 Phosphohistidine phosphatase
MSMEG_4656 Sugar ABC transporter ATP-binding protein (EC 3.6.3.17)	MSMEG_4273 Integral membrane protein
MSMEG_3793 Translation initiation factor IF-3	MSMEG_4272 HesB/YadR/YfhF family protein (Iron-sulfur cluster assembly accessory protein)
MSMEG_3792 50S ribosomal protein L35

Conditions

KO_stationary.phase_rep2

Plogcy5plogcy3slide110norm

Biological.replicate.5.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO..45min

Biological.replicate.6.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

DamtR.with.vs..DamtR.without.N_.rep2

WT.vs..DamtR.N.surplus_rep2

stphcy5plogcy3slide487norm

stphcy5plogcy3slide580norm

Biological.replicate.2.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.without.N_rep1

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.6..negative.control

dosR.WT_Replicate3

dosR.WT_Replicate2

Biological.replicate.2.of.7..panaxydol.treatment

DglnR_without.vs..with.N_rep1

Biological.replicate.6.of.6..negative.control

Biological.replicate.2.of.7..falcarinol.treatment

Biological.replicate.3.of.6..negative.control

WT_log.phase_rep2

WT.with.vs..without.N_dye.swap_rep1

WT.with.vs..without.N_dye.swap_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

Biological.replicate.6.of.6..isoniazid.treatment

Biological.replicate.5.of.7..ethambutol.treatment

WT.vs..DglnR.N_starvation_rep1

WT.vs..DglnR.N_starvation_rep2

Sub.MIC.INH

X4dbfcy3plogcy5slide903norm

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Biological.replicate.4.of.6..kanamycin.treatment

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Biological.replicate.2.of.6..isoniazid.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Bedaquiline.vs..DMSO.30min

WT.with.vs..without.N_rep1

KO_log.phase_rep2

KO_log.phase_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Wild.type.rep3

Biological.replicate.3.of.7..ethambutol.treatment

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.4

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

dcpA.knockout.rep2

dcpA.knockout.rep1

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.4.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X2.5..vs..50..air.saturation.Replicate.3

X4XR.rep2

X4XR.rep1

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.5.of.6..isoniazid.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

Biological.replicate.5.of.6..negative.control

WT.with.vs..without.N_rep2

Biological.replicate.5.of.7..falcarinol.treatment

DglnR_without.vs..with.N_dyeswap_rep2

Biological.replicate.1.of.6..negative.control

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

Comments