Module 138 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	0.00000000000004	0.00000000000014	78	28	20160204

Motifs

Motif 1
	e-value: 0.00000000000004
Motif 2
	e-value: 0.00000000000014

Module Plots

Members

MSMEG_0286 GntR-family protein transcriptional regulator (Transcriptional regulator, GntR family)	MSMEG_4086 Nitrilotriacetate monooxygenase component A (EC 1.14.13.-)
MSMEG_0287 HDIG domain protein (Uncharacterized protein)	MSMEG_4085 Nitrilotriacetate monooxygenase component A (EC 1.14.13.-) (Putative monooxygenase yxeK)
MSMEG_2335	MSMEG_3326 Putative glutamate--cysteine ligase 2-2 (EC 6.3.2.2) (Gamma-glutamylcysteine synthetase 2-2) (GCS 2-2) (Gamma-GCS 2-2)
MSMEG_2333	MSMEG_3479 Probable thiol peroxidase (EC 1.11.1.-)
MSMEG_1991 Acyl-CoA dehydrogenase FadE3 (EC 1.3.8.1) (Isovaleryl-CoA dehydrogenase)	MSMEG_2224 Acetyl-CoA C-acyltransferase
MSMEG_1416 FAD-dependent pyridine nucleotide-disulfide oxidoreductase (EC 1.18.1.3) (Pyridine nucleotide-disulphide oxidoreductase)	MSMEG_3364 Lysine exporter protein (LYSE/YGGA) (RhtB family protein transporter)
MSMEG_0667 Acyl-CoA dehydrogenase (EC 1.3.8.-) (Butyryl-CoA dehydrogenase)	MSMEG_3365 Transcriptional regulator, AraC family protein
MSMEG_0664 FAD dependent oxidoreductase	MSMEG_0288 FAD dependent oxidoreductase, putative
MSMEG_0665 Oxidoreductase, FAD-binding protein (EC 1.4.3.19) (Sarcosine oxidase subunit beta, putative)	MSMEG_1053 Uncharacterized protein
MSMEG_0608 Glyoxalase family protein (Glyoxalase/bleomycin resistance protein/dioxygenase)	MSMEG_0670 FAD dependent oxidoreductase (FAD-dependent pyridine nucleotide-disulfide oxidoreductase)
MSMEG_0097 Oxidoreductase, zinc-binding dehydrogenase family protein (Putative quinone oxidoreductase (NADPH:quinone oxidoreductase) (Zeta-crystallin)) (EC 1.6.5.5)	MSMEG_2223 Enoyl-CoA hydratase/isomerase family protein
MSMEG_0096 Peroxisomal hydratase-dehydrogenase-epimerase (EC 1.1.1.-) (EC 4.2.1.-)	MSMEG_5166 Na+/solute symporter (SSS sodium solute transporter superfamily)
MSMEG_1106 AraC family transcriptional regulator (Transcriptional regulator, AraC family protein)	MSMEG_5167 Major facilitator superfamily protein MFS_1
MSMEG_1107 Isonitrile hydratase, putative (ThiJ/PfpI)	MSMEG_5165 Integral membrane protein

Conditions

dcpA.knockout.rep2

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.2.of.7..falcarinol.treatment

MB100pruR.vs..MB100..rep.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

KO_log.phase_rep1

Wild.type.rep2.x

Wild.type.rep1.x

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

DglnR_without.vs..with.N_rep2

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Bedaquiline.vs..DMSO.60min

Biological.replicate.6.of.6..kanamycin.treatment

WT.vs..DamtR.N.surplus_.dyeswap_rep1

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Plogcy5plogcy3slide113norm

Biological.replicate.5.of.7..panaxydol.treatment

Sub.MIC.INH

WT.vs..DamtR.N.surplus_rep1

WT_log.phase_rep2

WT.with.vs..without.N_dye.swap_rep1

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..kanamycin.treatment

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

Biological.replicate.4.of.6..isoniazid.treatment

X4XR.rep1

Slow.vs..Fast.Replicate.4

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

dosR.WT_Replicate3

WT.with.vs..without.N_dye.swap_rep2

WT.vs..DglnR.N_starvation_dye.swap_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X3dbfcy5plogcy3slide603norm

Biological.replicate.1.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DglnR.N_starvation_rep1

Bedaquiline.vs..DMSO..45min

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DglnR.N_starvation_rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

dosR.WT_Replicate2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Biological.replicate.4.of.6..kanamycin.treatment

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments