Module 173 Residual: 0.56Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.56	0.0000000000019	0.0018	79	31	20160204

Motifs

Motif 1
	e-value: 0.0000000000019
Motif 2
	e-value: 0.0018

Module Plots

Members

MSMEG_0513 Integral membrane protein (Uncharacterized protein)	MSMEG_6704 Shikimate 5-dehydrogenase (Shikimate dehydrogenase substrate binding domain protein) (EC 1.1.1.25)
MSMEG_0106 Sensor kinase, two-component system (Sensory histidine kinase)	MSMEG_6708 Epoxide hydrolase (Haloacetate dehalogenase H-1) (EC 3.8.1.3)
MSMEG_1062 O-succinylbenzoic acid--CoA ligase (Putative O-succinylbenzoic acid--CoA ligase MenE) (EC 6.2.1.26)	MSMEG_5581 Conserved hypothetical integral membrane protein
MSMEG_4732 Glycosyl transferase, group 2 family protein, putative	MSMEG_2881 Aldehyde dehydrogenase (Betaine-aldehyde dehydrogenase) (EC 1.2.1.-)
MSMEG_3813 NAD-dependent epimerase/dehydratase	MSMEG_2882 5-exo-alcohol dehydrogenase (EC 1.1.1.-) (Alcohol dehydrogenase, zinc-containing) (EC 1.1.1.-)
MSMEG_2356 Acyltransferase (Lyso-ornithine lipid acyltransferase)	MSMEG_2010 Stress responsive A/B Barrel Domain superfamily protein (Stress responsive A/B barrel domain protein)
MSMEG_1361 Alpha-mannosidase (Glycoside hydrolase family 38)	MSMEG_5842 Conserved transmembrane protein (Uncharacterized protein)
MSMEG_1362 FabD2 (Uncharacterized protein)	MSMEG_2708 Uncharacterized protein
MSMEG_1103 o-succinylbenzoate synthase (OSB synthase) (OSBS) (EC 4.2.1.113) (4-(2'-carboxyphenyl)-4-oxybutyric acid synthase) (o-succinylbenzoic acid synthase)	MSMEG_2712 Hydrogenase assembly chaperone HypC/HupF (Hydrogenase assembly chaperone hypC/hupF)
MSMEG_0668 Integral membrane protein	MSMEG_0105 DNA-binding response regulator, LuxR family protein (Putative nitrate/nitrite response transcriptional regulatory protein Narl)
MSMEG_2714 Uncharacterized protein	MSMEG_0104 LysR-family transcriptional regulator (Transcriptional regulator, LysR family protein)
MSMEG_2710 Uncharacterized protein	MSMEG_2874 Uncharacterized protein
MSMEG_2711 (NiFe) hydrogenase maturation protein HypF ([NiFe] hydrogenase maturation protein HypF)	MSMEG_2877 Uncharacterized protein
MSMEG_5159 DNA-binding response regulator, putative (Response regulator, two-component system) (EC 3.1.1.61)	MSMEG_2876 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short chain dehydrogenase/reductase SDR) (EC 1.1.1.184)
MSMEG_2713 Peptidase M52, hydrogen uptake protein (Putative NiFe hydrogenase-specific C-terminal protease)	MSMEG_3628 ComA operon protein 2
MSMEG_6706 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

dcpA.knockout.rep2

Mycobacterium.smegmatis.Spheroplast.induced

Biological.replicate.4.of.7..ethambutol.treatment

dosR.WT_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

Biological.replicate.7.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep2

Biological.replicate.6.of.6..negative.control

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

Biological.replicate.2.of.7..falcarinol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Sub.MIC.INH

Plogcy5plogcy3slide111norm

Biological.replicate.3.of.6..kanamycin.treatment

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

DglnR_without.vs..with.N_rep1

X3dbfcy5plogcy3slide603norm

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

WT_stationary.phase_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep1

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Slow.vs..Fast.Replicate.1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

Wild.type.rep1.y

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Bedaquiline.vs..DMSO.120min

Comments