Module 196 Residual: 0.56Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.56	0.00000000038	170	77	31	20160204

Motifs

Motif 1
	e-value: 0.00000000038
Motif 2
	e-value: 170

Module Plots

Members

MSMEG_5102 ABC transporter ATP-binding protein (ABC transporter related protein)	MSMEG_3733 Uncharacterized protein
MSMEG_3408 Uncharacterized protein	MSMEG_6703 Luciferase-like protein (EC 1.14.14.5) (N5,N10-methylenetetrahydromethanopterin reductase-related protein)
MSMEG_5323 Ornithine-acylacyl carrier protein N-acyltransferase (Uncharacterized protein)	MSMEG_3736 Uncharacterized protein
MSMEG_1180 Amidase, hydantoinase/carbamoylase (EC 3.5.1.87) (N-carbamoyl-L-amino acid hydrolase)	MSMEG_5885 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_5084 Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266)	MSMEG_4632 Saccharopine dehydrogenase (EC 1.5.1.7)
MSMEG_0805 Uncharacterized protein	MSMEG_3238 Sulfurtransferase
MSMEG_3735 Uncharacterized protein (YtnM protein)	MSMEG_4122 Major facilitator family protein transporter (Major facilitator superfamily MFS_1)
MSMEG_3203 Lysine exporter protein (LYSE/YGGA) (Transporter, LysE family protein)	MSMEG_6260 Glutamate--ammonia ligase (EC 6.3.1.2) (Glutamine synthetase, type III) (EC 6.3.1.2)
MSMEG_0416 Uncharacterized protein	MSMEG_6261 Glutamine amidotransferase class-II (Glutamine amidotransferase, class II)
MSMEG_1179 Urocanate hydratase (Urocanase) (EC 4.2.1.49) (Imidazolonepropionate hydrolase)	MSMEG_6262 FwdC/FmdC family protein (Glutamate synthase (NADPH) GltB3 subunit) (EC 1.4.1.13)
MSMEG_1760 Short-chain dehydrogenase/reductase SDR (EC 1.1.1.100)	MSMEG_6263 Ferredoxin-dependent glutamate synthase (EC 1.4.1.13) (Glutamate synthase family protein)
MSMEG_6373 Uncharacterized protein	MSMEG_6264 FAD dependent oxidoreductase (EC 1.5.3.1) (Putative oxidoreductase)
MSMEG_1762 Piperideine-6-carboxylic acid dehydrogenase (Piperideine-6-carboxylic acid dehydrogenase Pcd) (EC 1.2.1.3)	MSMEG_6519 Pyridoxamine 5'-phosphate oxidase family protein (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein)
MSMEG_2375 Flavodoxin/nitric oxide synthase (NAD(P)H:quinone oxidoreductase, type IV) (EC 1.6.5.2)	MSMEG_4886 Major facilitator family protein transporter (Major facilitator superfamily MFS_1)
MSMEG_1921 UPF0225 protein MSMEG_1921	MSMEG_3489 Uncharacterized protein
MSMEG_4087 Major facilitator superfamily protein

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

WT.vs..DglnR.N_starvation_rep2

WT.vs..DamtR.without.N_rep1

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..negative.control

X4XR.rep1

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.4.of.6..isoniazid.treatment

MB100pruR.vs..MB100..rep.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

dosR.WT_Replicate1

WT.vs..DglnR.N_starvation_dye.swap_rep1

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Wild.type.rep1.y

Biological.replicate.3.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

MB100pruR.vs..MB100.rep.1

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

Biological.replicate.1.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Plogcy5plogcy3slide113norm

Biological.replicate.1.of.6..kanamycin.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

Biological.replicate.2.of.6..isoniazid.treatment

WT.vs..DamtR.N.surplus_rep1

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

X2.5..vs..50..air.saturation.Replicate.2

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Slow.vs..Fast.Replicate.1

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

dosR.WT_Replicate3

Biological.replicate.5.of.6..kanamycin.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

Biological.replicate.1.of.6..negative.control

Biological.replicate.5.of.7..falcarinol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments