Module 203 Residual: 0.52Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.52	2.2e-16	0.0000000000000066	76	29	20160204

Motifs

Motif 1
	e-value: 2.2e-16
Motif 2
	e-value: 0.0000000000000066

Module Plots

Members

MSMEG_5739 Putative long-chain fatty-acid--CoA ligase	MSMEG_4768 Transcriptional activator domain protein (Transcriptional regulator)
MSMEG_3523 Probable membrane protein (Uncharacterized protein)	MSMEG_4766 Low temperature requirement A (Low temperature requirement protein LtrA)
MSMEG_5737 Uncharacterized protein	MSMEG_5753 Serine/threonine specific protein phosphatase
MSMEG_3525 Transcriptional regulator, XRE family (Transcriptional regulator, XRE family protein)	MSMEG_5007 LprB protein
MSMEG_3070 LprG protein (Uncharacterized protein)	MSMEG_4690 Aminopeptidase G Metallo peptidase MEROPS family M01 (EC 3.4.11.2) (Aminopeptidase N)
MSMEG_3071 Riboflavin synthase alpha chain (EC 2.5.1.9) (Riboflavin synthase, alpha subunit)	MSMEG_3990 Major facilitator superfamily MFS_1 (Putative transporter)
MSMEG_5816 Uncharacterized protein	MSMEG_3993 Asp/Glu racemase
MSMEG_2694 Transcriptional regulator ClgR	MSMEG_0101 Uncharacterized protein
MSMEG_0099 Uncharacterized protein	MSMEG_5009 ABC transporter
MSMEG_3988 Transcriptional regulator, AsnC family protein	MSMEG_5008 ABC transporter, ATP-binding protein (Transmembrane ATP-binding protein ABC transporter)
MSMEG_3989 Peptidase M20D, amidohydrolase (EC 3.5.1.32)	MSMEG_5005 Lipoprotein LprC (LprC protein)
MSMEG_1788 Uncharacterized protein	MSMEG_5387 Membrane protein (Uncharacterized protein)
MSMEG_1789 Uncharacterized protein	MSMEG_6824 MarR-family protein regulatory protein
MSMEG_3069 Aminoglycosides/tetracycline-transport integral membrane protein (Major facilitator superfamily MFS_1)	MSMEG_2585 Uncharacterized protein
MSMEG_4769 Uncharacterized protein

Conditions

KO_stationary.phase_rep2

WT.vs..DglnR.N_starvation_rep2

WT.vs..DamtR.without.N_rep1

Wild.type.rep2.y

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Wild.type.rep2.x

Bedaquiline.vs..DMSO.30min

Biological.replicate.2.of.7..falcarinol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

dosR.WT_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

M..smegmatis.Acid.NO.treated

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.7..ethambutol.treatment

rel.knockout.rep2

Wild.type.rep3

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.6.of.7..panaxydol.treatment

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DglnR.N_starvation_dye.swap_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep1

WT.vs..DamtR.N.surplus_rep1

WT_log.phase_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

Biological.replicate.2.of.7..ethambutol.treatment

X2.5..vs..50..air.saturation.Replicate.1

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep2

X4XR.rep1

Slow.vs..Fast.Replicate.4

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

X2XR.rep1

X2XR.rep2

Biological.replicate.5.of.7..falcarinol.treatment

Biological.replicate.2.of.6..negative.control

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Sub.MIC.INH

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..falcarinol.treatment

Comments