Module 207 Residual: 0.48Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.48	7.4e-33	0.0021	81	28	20160204

Motifs

Motif 1
	e-value: 7.4e-33
Motif 2
	e-value: 0.0021

Module Plots

Members

MSMEG_3528 ErfK/YbiS/YcfS/YnhG family protein	MSMEG_6811 Uncharacterized protein
MSMEG_5773 Acyl-acyl-carrier protein desaturase DesA1 (EC 1.14.19.2) (Fatty acid desaturase)	MSMEG_0847 NADH-ubiquinone oxidoreductase chain 4L (NADH-ubiquinone/plastoquinone oxidoreductase chain 4l family protein)
MSMEG_0848 NADH ubiquinone oxidoreductase subunit 5	MSMEG_2590 AraC-family protein transcriptional regulator
MSMEG_0849 Oxygenase	MSMEG_6671 ABC transporter (Sulfate/thiosulfate import ATP-binding protein CysA) (EC 3.6.3.25)
MSMEG_1889 GTPase EngC (Putative ribosome small subunit-dependent GTPase RsgA)	MSMEG_0845 Multisubunit Na+/H+ antiporter (Multisubunit Na+/H+ antiporter MnhE subunit-like protein)
MSMEG_6672 Type I phosphodiesterase / nucleotide pyrophosphatase superfamily protein (Type I phosphodiesterase/nucleotide pyrophosphatase)	MSMEG_3679 Phosphohydrolase
MSMEG_0844 Multiple resistance and pH regulation protein F	MSMEG_4619 Cytochrome P450 124 cyp124 (EC 1.14.13.151) (Putative cytochrome P450 126) (EC 1.14.-.-)
MSMEG_6670 ABC transporter, permease protein, putative (Molybdate ABC transporter, permease protein)	MSMEG_0181 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)
MSMEG_4622 TetR family transcriptional regulator (Transcriptional regulator, TetR family protein)	MSMEG_0180 Putative HTH-type transcriptional regulator (Putative transcriptional regulatory protein)
MSMEG_0843 Monovalent cation/proton antiporter, MnhG/PhaG subunit (Multisubunit Na+/H+ antiporter, G subunit)	MSMEG_6669 ABC transporter, permease protein
MSMEG_3680 Uncharacterized protein	MSMEG_3188 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (7,8-diaminononanoate synthase) (Diaminopelargonic acid synthase)
MSMEG_5771 Uncharacterized protein	MSMEG_3189 8-amino-7-oxononanoate synthase (AONS) (EC 2.3.1.47) (7-keto-8-amino-pelargonic acid synthase) (7-KAP synthase) (KAPA synthase) (8-amino-7-ketopelargonate synthase) (Alpha-oxoamine synthase)
MSMEG_3190 ATP-dependent dethiobiotin synthetase BioD (EC 6.3.3.3) (DTB synthetase) (DTBS) (Dethiobiotin synthase)	MSMEG_3187 Putative acyltransferase domain protein (Uncharacterized protein)
MSMEG_0846 NADH-ubiquinone oxidoreductase/multisubunit na+/h+ antiporter, d subunit	MSMEG_2589 Uncharacterized protein

Conditions

WT.vs..DamtR.without.N_rep1

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

dosR.WT_Replicate4

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.5.of.6..negative.control

KO_log.phase_rep2

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

Wild.type.rep1.y

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.1.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

rel.knockout.rep2

Wild.type.rep3

WT.vs..DamtR.N.surplus_.dyeswap_rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep2

Biological.replicate.2.of.7..falcarinol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

stphcy5plogcy3slide487norm

Wild.type.rep2.y

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Biological.replicate.2.of.6..isoniazid.treatment

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

WT_log.phase_rep2

X2.5..vs..50..air.saturation.Replicate.5

stphcy3plogcy5slide581norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

X4XR.rep1

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X4dbfcy5plogcy3slide480norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

Wild.type.rep2.x

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DglnR.N_starvation_rep1

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Biological.replicate.4.of.6..negative.control

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Bedaquiline.vs..DMSO..45min

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Bedaquiline.vs..DMSO.120min

Comments