Module 220 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	8.4e-21	0.00000013	84	26	20160204

Motifs

Motif 1
	e-value: 8.4e-21
Motif 2
	e-value: 0.00000013

Module Plots

Members

MSMEG_3052 Uncharacterized protein	MSMEG_3751 Cytotoxin/hemolysin, TlyA (Hemolysin A)
MSMEG_6482 Secreted protein	MSMEG_3750 NAD kinase (EC 2.7.1.23) (ATP-dependent NAD kinase)
MSMEG_2838 Uncharacterized protein	MSMEG_3652 CDP-diacylglycerol-glycerol-3-phosphate
MSMEG_4077 Enoyl CoA hydratase (EC 4.2.1.-) (Enoyl-CoA hydratase)	MSMEG_4223 Uncharacterized protein
MSMEG_4076 Acyl-CoA dehydrogenase (EC 1.3.8.-) (Butyryl-CoA dehydrogenase)	MSMEG_6140 Membrane protein
MSMEG_0538 MarR family transcriptional regulator (Regulatory protein, MarR)	MSMEG_6517 Uncharacterized protein
MSMEG_0537 Conserved hypothetical membrane protein (Uncharacterized protein)	MSMEG_6479 Putative transcriptional regulator
MSMEG_4078 Hypothetical metabolite transport protein YaaU (Major facilitator superfamily (MFS_1) transporter)	MSMEG_1650 Methyltransferase type 11
MSMEG_6691 Glutamine amidotransferase	MSMEG_1651 Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine O-trans-acetylase) (HTA) (Homoserine transacetylase)
MSMEG_6690 Glutamine amidotransferase class-I (Peptidase C26)	MSMEG_1652 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
MSMEG_1361 Alpha-mannosidase (Glycoside hydrolase family 38)	MSMEG_6688 Purine catabolism PurC domain protein (Regulatory protein)
MSMEG_1362 FabD2 (Uncharacterized protein)	MSMEG_2583 Putative transcriptional regulator
MSMEG_3752 Uncharacterized protein	MSMEG_2582 Uncharacterized protein

Conditions

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

KO_log.phase_rep1

WT.vs..DamtR.without.N_rep2

M..smegmatis.Acid.NO.treated

Mycobacterium.smegmatis.Spheroplast.induced

dosR.WT_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

X2XR.rep1

Biological.replicate.5.of.6..kanamycin.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.5.of.6..negative.control

KO_log.phase_rep2

Wild.type.rep2.y

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.2

Biological.replicate.2.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Wild.type.rep3

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

X0.6..vs..50..air.saturation.Replicate.1

Sub.MIC.INH

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

mc2155.vs.Dcrp1.replicate.1

X3dbfcy3plogcy5slide607norm

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

X3dbfcy5plogcy3slide603norm

Biological.replicate.2.of.6..isoniazid.treatment

WT.vs..DamtR.N.surplus_rep1

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

X3dbfcy5plogcy3slide601norm

stphcy3plogcy5slide581norm

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

dosR.WT_Replicate2

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.with.vs..without.N_rep2

WT.vs..DglnR.N_starvation_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X2XR.rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

WT.vs..DglnR.N_starvation_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.4.of.6..kanamycin.treatment

Comments