Module 232 Residual: 0.50Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.50	4.2e-36	0.00034	82	26	20160204

Motifs

Motif 1
	e-value: 4.2e-36
Motif 2
	e-value: 0.00034

Module Plots

Members

MSMEG_2235 Amidohydrolase 2 (Amidohydrolase family protein)	MSMEG_6417 Uncharacterized protein
MSMEG_6019 ABC-type sugar transport system ATPase component (Putative sugar ABC transporter ATP-binding protein) (EC 3.6.3.17)	MSMEG_4806 Acyl-CoA dehydrogenase (Putative acyl-CoA dehydrogenase)
MSMEG_6018 Xylose transport system permease protein XylH (EC 3.6.3.17)	MSMEG_4805 Acyl-CoA dehydrogenase
MSMEG_2149 Uncharacterized protein	MSMEG_3348 Bacterial extracellular solute-binding protein, family protein 7 (TRAP dicarboxylate transporter DctP subunit)
MSMEG_5971 Uncharacterized protein	MSMEG_6022 Xylose repressor, ROK-family protein transcriptional regulator
MSMEG_3292 DNA-binding protein (Transcriptional regulator, XRE family)	MSMEG_2244 Rieske (2Fe-2S) region (Rieske [2Fe-2S] domain protein)
MSMEG_3291 Uncharacterized protein	MSMEG_6020 D-xylose-binding periplasmic protein (EC 3.6.3.17) (Periplasmic binding protein/LacI transcriptional regulator)
MSMEG_4433 Dehydrogenase	MSMEG_6021 Xylose isomerase (EC 5.3.1.5)
MSMEG_4431 Putative regulatory protein (Uncharacterized protein)	MSMEG_2245 Bile-acid 7-alpha dehydratase (EC 4.2.1.106) (Uncharacterized protein)
MSMEG_4104 Major facilitator superfamily MFS_1 (Transporter, major facilitator family protein)	MSMEG_2079 Alcohol dehydrogenase (Alcohol dehydrogenase, zinc-binding protein)
MSMEG_1962 Uncharacterized protein	MSMEG_1961 Uncharacterized protein
MSMEG_1960 Uncharacterized protein	MSMEG_2813 Sensor kinase
MSMEG_4049 Sugar transporter, permease protein	MSMEG_2812 C-5 sterol desaturase (EC 1.3.-.-) (Membrane-bound C-5 Sterol desaturase erg3)

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

dcpA.knockout.rep2

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..negative.control

Wild.type.rep2.x

Biological.replicate.3.of.7..falcarinol.treatment

X2XR.rep1

dosR.WT_Replicate2

KO_log.phase_rep2

KO_log.phase_rep1

DglnR_without.vs..with.N_rep1

Wild.type.rep1.y

DglnR_without.vs..with.N_rep2

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.1.of.6..kanamycin.treatment

MB100pruR.vs..MB100.rep.1

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.6..negative.control

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.2.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

Sub.MIC.INH

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Biological.replicate.2.of.7..falcarinol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Biological.replicate.2.of.6..isoniazid.treatment

X3dbfcy5plogcy3slide601norm

WT.with.vs..without.N_dye.swap_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..kanamycin.treatment

WT_stationary.phase_rep1

X4XR.rep1

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.5.of.6..isoniazid.treatment

Slow.vs..Fast.Replicate.1

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

Wild.type.rep3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.with.vs..without.N_rep2

Biological.replicate.4.of.7..ethambutol.treatment

WT.with.vs..without.N_rep1

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

Biological.replicate.2.of.6..negative.control

Biological.replicate.4.of.6..isoniazid.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

WT.vs..DglnR.N_starvation_dye.swap_rep1

Comments