Module 248 Residual: 0.39Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.39	6e-22	0.000002	85	15	20160204

Motifs

Motif 1
	e-value: 6e-22
Motif 2
	e-value: 0.000002

Module Plots

Members

MSMEG_3009 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (EC 1.1.1.-)	MSMEG_2994 Amidohydrolase 2 (Amidohydrolase family protein)
MSMEG_1571 Integral membrane protein	MSMEG_2995 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein)
MSMEG_1572 Transcriptional regulator, GntR family protein	MSMEG_3010 Acetyl-hydrolase (EC 3.1.1.-) (Caprolactone hydrolase) (EC 3.1.1.6)
MSMEG_0144 HNH endonuclease (Uncharacterized protein)	MSMEG_2993 Acyl-CoA dehydrogenase (Acyl-CoA dehydrogenase, C-domain protein)
MSMEG_5108 Uncharacterized protein	MSMEG_2992 Putative acyl-CoA dehydrogenase
MSMEG_5106 HNH endonuclease	MSMEG_0650 HTH-type transcriptional repressor PhnF
MSMEG_2996 Luciferase family protein (Uncharacterized protein)	MSMEG_0647 Phosphate-import ATP-binding protein PhnC (EC 3.6.3.27)
MSMEG_0649 Phosphate-import protein PhnD

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Wild.type.rep2.y

Biological.replicate.4.of.6..negative.control

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

Mycobacterium.smegmatis.Spheroplast.induced

Plogcy5plogcy3slide110norm

Biological.replicate.3.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.30min

Biological.replicate.1.of.6..negative.control

MB100pruR.vs..MB100..rep.3

dosR.WT_Replicate1

Biological.replicate.4.of.6..kanamycin.treatment

KO_log.phase_rep1

Biological.replicate.7.of.7..falcarinol.treatment

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

DglnR_without.vs..with.N_rep2

Biological.replicate.4.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

Biological.replicate.7.of.7..panaxydol.treatment

stphcy3plogcy5slide581norm

WT.vs..DamtR.N.surplus_rep2

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.2.of.6..isoniazid.treatment

WT.vs..DamtR.N.surplus_rep1

Biological.replicate.3.of.6..kanamycin.treatment

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

X3dbfcy3plogcy5slide607norm

X4dbfcy5plogcy3slide480norm

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep2

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Wild.type.rep2.x

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

mc2155.vs.Dcrp1.replicate.1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

Biological.replicate.5.of.7..falcarinol.treatment

X2XR.rep1

X2XR.rep2

WT.vs..DglnR.N_starvation_dye.swap_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Biological.replicate.4.of.6..isoniazid.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

Wild.type.rep3

Comments