Module 261 Residual: 0.48Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.48	4.7e-17	0.0000000000000074	84	32	20160204

Motifs

Motif 1
	e-value: 4.7e-17
Motif 2
	e-value: 0.0000000000000074

Module Plots

Members

MSMEG_4543 ABC transporter system integral membrane protein (Binding-protein-dependent transport systems inner membrane component)	MSMEG_1083 Uncharacterized protein
MSMEG_4542 Oligopeptide ABC transporter integral membrane protein (Oligopeptide transport integral membrane protein)	MSMEG_0391 Rmt3 protein
MSMEG_4541 ABC peptide transporter (ABC transporter, ATP-binding protein)	MSMEG_1085 Dipeptide transport system permease protein DppB (Putative didpeptide ABC transporter permease protein)
MSMEG_4982 Uncharacterized protein	MSMEG_1084 ABC transporter, solute-binding protein (EC 3.1.3.26) (Peptide/opine/nickel uptake family protein ABC transporter, periplasmic substrate-binding protein, putative)
MSMEG_2311	MSMEG_1086 ABC transporter permease protein (ABC-type oligopeptide transport systems, permease component)
MSMEG_3681 Uncharacterized protein	MSMEG_1844 Uncharacterized protein
MSMEG_5599 Uncharacterized protein	MSMEG_6454 Uncharacterized protein
MSMEG_5597 TetR family transcriptional regulator (Transcriptional regulator, TetR family protein)	MSMEG_6452 [NADP+] succinate-semialdehyde dehydrogenase (EC 1.2.1.16)
MSMEG_0554 ABC transporter permease protein, putative (Binding-protein-dependent transport systems inner membrane component)	MSMEG_6600 Transposase
MSMEG_0555 ABC transporter permease protein (Binding-protein-dependent transport systems inner membrane component)	MSMEG_0182 Epoxide hydrolase (EC 3.3.2.-) (Epoxide hydrolase 1) (EC 3.3.2.9)
MSMEG_0556 ABC transporter related protein (ABC transporter, nucleotide binding/ATPase protein)	MSMEG_4162 Uncharacterized protein
MSMEG_0553 Probable sugar ABC transporter, substrate-binding protein, putative	MSMEG_5684 Phosphoserine aminotransferase (EC 2.6.1.52) (Phosphohydroxythreonine aminotransferase)
MSMEG_6317 Lipolytic enzyme, G-D-S-L	MSMEG_4983 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein)
MSMEG_0157 Oxalyl-CoA decarboxylase (EC 4.1.1.8) (Oxalyl-CoA decarboxylase OxcA)	MSMEG_0634 PAP2 superfamily protein (Phosphoesterase, PA-phosphatase related protein)
MSMEG_0231 Uncharacterized protein	MSMEG_4981 Aminoglycoside phosphotransferase (Phosphotransferase enzyme family protein, putative)
MSMEG_0232 Conserved integral membrane protein (Sugar transporter family protein)	MSMEG_6825 Caax amino protease family protein, putative

Conditions

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

KO_log.phase_rep1

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

dosR.WT_Replicate4

Biological.replicate.3.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.30min

Biological.replicate.1.of.6..negative.control

Biological.replicate.4.of.6..negative.control

KO_log.phase_rep2

Wild.type.rep2.y

Wild.type.rep1.y

Biological.replicate.7.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep2

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

rel.knockout.rep2

X4XR.rep1

Biological.replicate.1.of.7..falcarinol.treatment

X2XR.rep2

Biological.replicate.6.of.7..falcarinol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.4.of.6..kanamycin.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

dcpA.knockout.rep1

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.2.of.7..falcarinol.treatment

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT.with.vs..without.N_dye.swap_rep1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep1

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.5.of.6..isoniazid.treatment

Slow.vs..Fast.Replicate.1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X3dbfcy5plogcy3slide603norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

Biological.replicate.7.of.7..panaxydol.treatment

DglnR_without.vs..with.N_dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.120min

Comments