Module 272 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	0.000000000066	840	78	29	20160204

Motifs

Motif 1
	e-value: 0.000000000066
Motif 2
	e-value: 840

Module Plots

Members

MSMEG_6862 Putative transcription regulator (TetR family transcriptional regulator)	MSMEG_5588 Uncharacterized protein
MSMEG_6635 Alpha subunit of malonate decarboxylase (Malonate decarboxylase alpha subunit)	MSMEG_0421 Uncharacterized protein
MSMEG_6861 Cupin 2, conserved barrel (Cupin domain protein)	MSMEG_5438 Ribosomal RNA small subunit methyltransferase A (EC 2.1.1.182) (16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase) (16S rRNA dimethyladenosine transferase) (16S rRNA dimethylase) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase)
MSMEG_1998 Epoxide hydrolase EphC (EC 3.3.2.-) (Hydrolase, alpha/beta fold family protein)	MSMEG_3024 NovD (Uncharacterized protein)
MSMEG_2443 Uncharacterized protein	MSMEG_5112 Uncharacterized protein
MSMEG_3424 S-adenosyl-L-methionine-dependent methyltransferase (EC 2.1.1.-)	MSMEG_5437 Probable serine/threonine-protein kinase PknB (EC 2.7.11.1) (Uncharacterized protein)
MSMEG_2991 Permease of the major facilitator superfamily protein	MSMEG_1199 Conserved integral membrane protein (Uncharacterized protein)
MSMEG_6400 Conserved transmembrane protein (Probable conserved transmembrane protein)	MSMEG_5587 Uncharacterized protein
MSMEG_2354 Nitroreductase (Oxidoreductase)	MSMEG_5929 Uncharacterized protein
MSMEG_2759 Uncharacterized protein	MSMEG_0776 Uncharacterized protein
MSMEG_3490 Putative membrane acyltransferase	MSMEG_1238 Type III restriction enzyme (EC 3.1.21.3) (Type III restriction enzyme, res subunit)
MSMEG_1200 Extracellular solute-binding protein family 3 (Serine/threonine-protein kinase PknD) (EC 2.7.11.1)	MSMEG_5284 Patatin
MSMEG_0270 Aminoglycoside phosphotransferase (EC 2.7.1.39)	MSMEG_2810 Major facilitator superfamily MFS_1 (Major facilitator superfamily protein)
MSMEG_1307 EthD protein (Putative ethyl tert-butyl ether degradation protein EthD)	MSMEG_3761 Clp, N terminal (Putative Clp protease subunit)
MSMEG_1305 TetR family protein regulatory protein (TetR family regulatory protein)

Conditions

KO_stationary.phase_rep2

WT.vs..DglnR.N_starvation_rep2

WT.vs..DamtR.without.N_rep1

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Bedaquiline.vs..DMSO.15min

Biological.replicate.4.of.6..negative.control

dosR.WT_Replicate4

Bedaquiline.vs..DMSO.30min

dosR.WT_Replicate3

dosR.WT_Replicate2

dosR.WT_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

X3dbfcy5plogcy3slide601norm

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

rel.knockout.rep1

Biological.replicate.6.of.6..negative.control

Biological.replicate.6.of.7..falcarinol.treatment

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

WT_log.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Wild.type.rep2.y

Biological.replicate.1.of.6..kanamycin.treatment

stphcy3plogcy5slide581norm

mc2155.vs.Dcrp1.replicate.4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

dcpA.knockout.rep2

dcpA.knockout.rep1

X2.5..vs..50..air.saturation.Replicate.4

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

WT_stationary.phase_rep2

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.2.of.7..ethambutol.treatment

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

WT.vs..DglnR.N_starvation_dye.swap_rep1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

Biological.replicate.1.of.7..panaxydol.treatment

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_rep1

Wild.type.rep2.x

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

Biological.replicate.2.of.6..negative.control

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

X4dbfcy3plogcy5slide903norm

Wild.type.rep3

Comments