Module 272 Residual: 0.55
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Residual Motif 1 e-value Motif 2 e-value Conditions Genes version
0.55 0.000000000066 840 78 29 20160204
Motif 1
e-value: 0.000000000066
e-value: 840
MSMEG_6862 Putative transcription regulator (TetR family transcriptional regulator) MSMEG_5588 Uncharacterized protein
MSMEG_6635 Alpha subunit of malonate decarboxylase (Malonate decarboxylase alpha subunit) MSMEG_0421 Uncharacterized protein
MSMEG_6861 Cupin 2, conserved barrel (Cupin domain protein) MSMEG_5438 Ribosomal RNA small subunit methyltransferase A (EC 2.1.1.182) (16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase) (16S rRNA dimethyladenosine transferase) (16S rRNA dimethylase) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase)
MSMEG_1998 Epoxide hydrolase EphC (EC 3.3.2.-) (Hydrolase, alpha/beta fold family protein) MSMEG_3024 NovD (Uncharacterized protein)
MSMEG_2443 Uncharacterized protein MSMEG_5112 Uncharacterized protein
MSMEG_3424 S-adenosyl-L-methionine-dependent methyltransferase (EC 2.1.1.-) MSMEG_5437 Probable serine/threonine-protein kinase PknB (EC 2.7.11.1) (Uncharacterized protein)
MSMEG_2991 Permease of the major facilitator superfamily protein MSMEG_1199 Conserved integral membrane protein (Uncharacterized protein)
MSMEG_6400 Conserved transmembrane protein (Probable conserved transmembrane protein) MSMEG_5587 Uncharacterized protein
MSMEG_2354 Nitroreductase (Oxidoreductase) MSMEG_5929 Uncharacterized protein
MSMEG_2759 Uncharacterized protein MSMEG_0776 Uncharacterized protein
MSMEG_3490 Putative membrane acyltransferase MSMEG_1238 Type III restriction enzyme (EC 3.1.21.3) (Type III restriction enzyme, res subunit)
MSMEG_1200 Extracellular solute-binding protein family 3 (Serine/threonine-protein kinase PknD) (EC 2.7.11.1) MSMEG_5284 Patatin
MSMEG_0270 Aminoglycoside phosphotransferase (EC 2.7.1.39) MSMEG_2810 Major facilitator superfamily MFS_1 (Major facilitator superfamily protein)
MSMEG_1307 EthD protein (Putative ethyl tert-butyl ether degradation protein EthD) MSMEG_3761 Clp, N terminal (Putative Clp protease subunit)
MSMEG_1305 TetR family protein regulatory protein (TetR family regulatory protein)
KO_stationary.phase_rep2
WT.vs..DglnR.N_starvation_rep2
WT.vs..DamtR.without.N_rep1
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Bedaquiline.vs..DMSO.15min
Biological.replicate.4.of.6..negative.control
dosR.WT_Replicate4
Bedaquiline.vs..DMSO.30min
dosR.WT_Replicate3
dosR.WT_Replicate2
dosR.WT_Replicate1
Biological.replicate.2.of.6..kanamycin.treatment
KO_log.phase_rep1
Plogcy5plogcy3slide110norm
X3dbfcy5plogcy3slide601norm
Wild.type.rep1.y
MB100pruR.vs..MB100.rep.2
WT.vs..DamtR.without.N_.dyeswap_rep1
WT.vs..DamtR.without.N_.dyeswap_rep2
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
Biological.replicate.3.of.7..falcarinol.treatment
rel.knockout.rep1
Biological.replicate.6.of.6..negative.control
Biological.replicate.6.of.7..falcarinol.treatment
Biological.replicate.4.of.6..isoniazid.treatment
Biological.replicate.4.of.6..kanamycin.treatment
DamtR.with.vs..DamtR.without.N_.rep2
WT_log.phase_rep2
Biological.replicate.5.of.7..falcarinol.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2
Wild.type.rep2.y
Biological.replicate.1.of.6..kanamycin.treatment
stphcy3plogcy5slide581norm
mc2155.vs.Dcrp1.replicate.4
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
dcpA.knockout.rep2
dcpA.knockout.rep1
X2.5..vs..50..air.saturation.Replicate.4
X3dbfcy3plogcy5slide607norm
WT_log.phase_rep1
WT.with.vs..without.N_dye.swap_rep1
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
WT_stationary.phase_rep2
Biological.replicate.3.of.6..kanamycin.treatment
Biological.replicate.2.of.7..ethambutol.treatment
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Slow.vs..Fast.Replicate.5
WT.vs..DglnR.N_starvation_dye.swap_rep1
Slow.vs..Fast.Replicate.2
Slow.vs..Fast.Replicate.3
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
X3dbfcy5plogcy3slide603norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
X4dbfcy5plogcy3slide901norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_.dyeswap_rep1
WT.vs..DglnR.N_starvation_rep1
Biological.replicate.1.of.7..panaxydol.treatment
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
Wild.type.rep2.x
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
Biological.replicate.2.of.6..negative.control
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate3
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
X4dbfcy3plogcy5slide903norm
Wild.type.rep3
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