Module 292 Residual: 0.56Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.56	6.2e-32	0.000000000081	78	18	20160204

Motifs

Motif 1
	e-value: 6.2e-32
Motif 2
	e-value: 0.000000000081

Module Plots

Members

MSMEG_1660 2-nitropropane dioxygenase, NPD (Oxidoreductase, 2-nitropropane dioxygenase family protein)	MSMEG_2121 Multiphosphoryl transfer protein (MTP) (EC 2.7.1.-) (EC 2.7.3.9) (Phosphoenolpyruvate-protein phosphotransferase)
MSMEG_0453 Carbohydrate kinase, thermoresistant gluconokinase (EC 2.7.1.12) (Shikimate kinase) (EC 2.7.1.71)	MSMEG_1044 Uncharacterized protein
MSMEG_0859 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein)	MSMEG_2325
MSMEG_0454 GntR-family protein transcriptional regulator (GntR-family transcriptional regulator)	MSMEG_2324
MSMEG_0857 Uncharacterized protein	MSMEG_2124 Glycerol uptake facilitator, MIP channel
MSMEG_4881 Methylmalonyl-CoA mutase, N-terminus of large subunit	MSMEG_2123 Dihydroxyacetone kinase, DhaK subunit (EC 2.7.1.-) (Uncharacterized protein)
MSMEG_1659 Multidrug resistance protein, SMR family protein (Small multidrug resistance protein)	MSMEG_2122 Dihydroxyacetone kinase, L subunit (EC 2.7.1.-) (Dihydroxyacetone kinase, subunit L) (EC 2.7.1.29)
MSMEG_1045 Integral membrane protein	MSMEG_2323
MSMEG_4882 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR)	MSMEG_4883 AMP-dependent synthetase and ligase (EC 6.2.1.26)

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

dcpA.knockout.rep2

Biological.replicate.4.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.30min

Biological.replicate.1.of.6..negative.control

Biological.replicate.5.of.6..kanamycin.treatment

dosR.WT_Replicate1

Biological.replicate.4.of.6..kanamycin.treatment

Wild.type.rep2.y

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.60min

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.2.of.7..falcarinol.treatment

rel.knockout.rep1

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DglnR.N_starvation_dye.swap_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.7.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.5.of.7..panaxydol.treatment

WT.vs..DamtR.N.surplus_rep1

Plogcy5plogcy3slide111norm

Biological.replicate.3.of.6..kanamycin.treatment

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

X3dbfcy3plogcy5slide607norm

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep2

WT_stationary.phase_rep1

X4XR.rep2

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X4XR.rep1

Slow.vs..Fast.Replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

X3dbfcy5plogcy3slide603norm

mc2155.vs.Dcrp1.replicate.1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Sub.MIC.INH

Plogcy5plogcy3slide113norm

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..falcarinol.treatment

Comments