Module 303 Residual: 0.55
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.55 | 1.6e-21 | 0.000000047 | 77 | 34 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 1.6e-21 | |
| Motif 2 |
 |
| e-value: 0.000000047 |
| MSMEG_4778 Putative thiolase (Thiolase) (EC 2.3.1.176) | MSMEG_2194 MerR-family protein transcriptional regulator (MerR-family transcriptional regulator) |
| MSMEG_3707 Uncharacterized protein | MSMEG_2192 Uncharacterized protein |
| MSMEG_1723 Uncharacterized protein | MSMEG_2190 Acyl-CoA dehydrogenase (EC 1.3.8.1) (Acyl-CoA dehydrogenase domain protein) |
| MSMEG_5736 Cyclase/dehydrase | MSMEG_2191 Acyl-CoA dehydrogenase (EC 1.3.-.-) (Acyl-CoA dehydrogenase family protein) (EC 1.3.99.-) |
| MSMEG_4776 Glyoxalase/bleomycin resistance protein/dioxygenase (Uncharacterized protein) | MSMEG_6269 Magnesium transporter MgtE |
| MSMEG_4777 Uncharacterized protein | MSMEG_4145 Cupin 2 protein (Cupin domain protein) |
| MSMEG_1722 Uncharacterized protein | MSMEG_2884 Cyclohexanone monooxygenase |
| MSMEG_6713 Hydroxyquinol 1,2-dioxygenase (EC 1.13.11.-) (EC 1.13.11.37) | MSMEG_2885 Short-chain dehydrogenase/reductase SDR (EC 1.1.1.100) |
| MSMEG_2558 Cytochrome P450 124 cyp124 (EC 1.14.13.151) (NikQ protein) | MSMEG_5822 Uncharacterized protein |
| MSMEG_2559 Conserved domain protein (Putative ferredoxin) | MSMEG_2883 Feruloyl-CoA synthetase |
| MSMEG_2557 Putative tetR family regulator (Transcriptional regulator, TetR family protein) | MSMEG_6682 RNA polymerase sigma-70 factor, putative (Sigma-24 (FecI-like)) |
| MSMEG_2146 Gp15 protein (Gp22) | MSMEG_6683 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (Probable peroxiredoxin, putative) (EC 1.11.1.15) |
| MSMEG_5171 Uncharacterized protein | MSMEG_2508 UPF0102 protein MSMEG_2508/MSMEI_2448 |
| MSMEG_6423 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphoryl diester phosphodiesterase family protein) | MSMEG_5239 Fructose-1,6-bisphosphatase, class II (EC 3.1.3.11) |
| MSMEG_5415 Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase) | MSMEG_5305 Choline dehydrogenase (EC 1.1.99.1) (Glucose-methanol-choline oxidoreductase) |
| MSMEG_5738 Uncharacterized protein (Zinc finger, UBP-type) | MSMEG_1133 Bifunctional short chain isoprenyl diphosphate synthase (EC 2.5.1.1) (EC 2.5.1.10) |
| MSMEG_5170 Pyridoxamine 5'-phosphate oxidase family protein (Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein) | MSMEG_5240 Fumarate hydratase class II (Fumarase C) (EC 4.2.1.2) |
WT.vs..DamtR.without.N_rep1
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Biological.replicate.4.of.6..negative.control
dcpA.knockout.rep2
Mycobacterium.smegmatis.Spheroplast.induced
Plogcy5plogcy3slide110norm
Biological.replicate.4.of.7..ethambutol.treatment
X2XR.rep1
MB100pruR.vs..MB100..rep.3
dosR.WT_Replicate1
Wild.type.rep2.y
DglnR_without.vs..with.N_rep1
Wild.type.rep1.y
MB100pruR.vs..MB100.rep.4
Biological.replicate.3.of.7..panaxydol.treatment
DglnR_without.vs..with.N_rep2
WT.vs..DamtR.without.N_.dyeswap_rep2
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.4
rel.knockout.rep2
rel.knockout.rep1
Biological.replicate.1.of.7..falcarinol.treatment
WT.vs..DamtR.without.N_rep2
dosR.WT_Replicate4
Biological.replicate.4.of.6..isoniazid.treatment
WT.vs..DglnR.N_starvation_dye.swap_rep1
X0.6..vs..50..air.saturation.Replicate.3
Sub.MIC.INH
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
WT.vs..DglnR.N_starvation_dye.swap_rep2
WT.vs..DamtR.N.surplus_rep1
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2
mc2155.vs.Dcrp1.replicate.2
Biological.replicate.2.of.7..ethambutol.treatment
WT.vs..DamtR.N.surplus_rep2
Biological.replicate.5.of.7..panaxydol.treatment
dcpA.knockout.rep1
Biological.replicate.2.of.7..falcarinol.treatment
X3dbfcy5plogcy3slide603norm
Biological.replicate.2.of.6..isoniazid.treatment
X2.5..vs..50..air.saturation.Replicate.5
stphcy3plogcy5slide581norm
WT_log.phase_rep1
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
X4XR.rep2
X4XR.rep1
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Slow.vs..Fast.Replicate.5
Bedaquiline.vs..DMSO.60min
Biological.replicate.4.of.7..falcarinol.treatment
Slow.vs..Fast.Replicate.1
Slow.vs..Fast.Replicate.2
Slow.vs..Fast.Replicate.3
X4dbfcy5plogcy3slide480norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
Wild.type.rep3
Wild.type.rep2.x
WT.vs..DamtR.N.surplus_dyeswap_rep2
X4dbfcy3plogcy5slide903norm
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.6.of.6..kanamycin.treatment
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