Module 309 Residual: 0.52
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.52 | 6.6e-19 | 0.00000035 | 77 | 24 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 6.6e-19 | |
| Motif 2 |
 |
| e-value: 0.00000035 |
| MSMEG_5650 AMP-dependent synthetase and ligase (EC 6.2.1.1) | MSMEG_6533 Uncharacterized protein |
| MSMEG_5651 LuxR-family transcriptional regulator (Transcriptional regulator, LuxR family protein) | MSMEG_6535 Elongation factor EF-G (EC 3.6.5.3) (Translation elongation factor EF-G) |
| MSMEG_0900 Aldehyde dehydrogenase (EC 1.2.1.3) (Eptc-inducible aldehyde dehydrogenase) (EC 1.2.1.3) | MSMEG_5649 Acyl-CoA synthase (Fatty-acid-CoA ligase FadD35) |
| MSMEG_0767 Uncharacterized protein | MSMEG_5824 Phosphoribosylformylglycinamidine synthase subunit PurL (FGAM synthase) (EC 6.3.5.3) (Formylglycinamide ribonucleotide amidotransferase subunit II) (Glutamine amidotransferase PurL) (Phosphoribosylformylglycinamidine synthase subunit II) |
| MSMEG_0766 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) | MSMEG_5823 Conserved membrane-spanning protein (Uncharacterized protein) |
| MSMEG_3094 Oxidoreductase, zinc-binding dehydrogenase family protein | MSMEG_5821 Caax amino protease family protein |
| MSMEG_0769 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (EC 4.2.99.-) | MSMEG_0899 Prolyl oligopeptidase (EC 3.4.21.26) (Prolyl oligopeptidase family protein) |
| MSMEG_0768 Rhodanese domain protein (Uncharacterized protein) | MSMEG_6049 Secreted protein |
| MSMEG_3092 Transcriptional regulator, DeoR family (Transcriptional regulator, sugar-binding family protein) | MSMEG_0770 Uncharacterized protein |
| MSMEG_3093 Carbohydrate kinase FGGY (EC 2.7.1.16) (Putative sugar kinase protein) (EC 2.7.1.-) | MSMEG_3768 Macrolide-transport ATP-binding protein abc transporter |
| MSMEG_1348 RNA polymerase ECF-subfamily protein sigma factor (RNA polymerase sigma-70 factor, ECF subfamily) | MSMEG_3767 Acyl-CoA synthase |
| MSMEG_2735 Diaminopimelate epimerase (DAP epimerase) (EC 5.1.1.7) | MSMEG_1349 DGPFAETKE family protein (Dgpf domain family protein) |
KO_stationary.phase_rep1
Bedaquiline.vs..DMSO.30min
Biological.replicate.5.of.7..falcarinol.treatment
WT.vs..DamtR.without.N_rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.4.of.6..negative.control
Sub.MIC.INH
Mycobacterium.smegmatis.Spheroplast.induced
X4XR.rep1
Biological.replicate.4.of.6..isoniazid.treatment
Biological.replicate.5.of.6..kanamycin.treatment
KO_log.phase_rep2
KO_log.phase_rep1
DglnR_without.vs..with.N_rep1
Biological.replicate.7.of.7..falcarinol.treatment
DglnR_without.vs..with.N_rep2
WT.vs..DamtR.without.N_.dyeswap_rep1
WT.vs..DamtR.without.N_.dyeswap_rep2
mc2155.vs.Dcrp1.replicate.3
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
Biological.replicate.1.of.7..ethambutol.treatment
Biological.replicate.3.of.7..falcarinol.treatment
Wild.type.rep3
Bedaquiline.vs..DMSO..45min
Biological.replicate.6.of.7..falcarinol.treatment
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.3.of.6..isoniazid.treatment
DamtR.with.vs..DamtR.without.N_.rep2
X0.6..vs..50..air.saturation.Replicate.2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
stphcy5plogcy3slide487norm
mc2155.vs.Dcrp1.replicate.1
Biological.replicate.1.of.7..panaxydol.treatment
Biological.replicate.3.of.6..negative.control
Biological.replicate.5.of.7..panaxydol.treatment
dcpA.knockout.rep1
Biological.replicate.2.of.7..falcarinol.treatment
Biological.replicate.2.of.6..isoniazid.treatment
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
stphcy3plogcy5slide581norm
WT.with.vs..without.N_dye.swap_rep1
X2.5..vs..50..air.saturation.Replicate.1
WT.with.vs..without.N_dye.swap_rep2
WT_stationary.phase_rep2
WT_stationary.phase_rep1
Biological.replicate.5.of.7..ethambutol.treatment
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Slow.vs..Fast.Replicate.1
Biological.replicate.6.of.7..ethambutol.treatment
Biological.replicate.7.of.7..panaxydol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
Biological.replicate.5.of.6..negative.control
X4dbfcy5plogcy3slide480norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
Biological.replicate.4.of.6..kanamycin.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_.dyeswap_rep1
WT.with.vs..without.N_rep2
WT.with.vs..without.N_rep1
DglnR_without.vs..with.N_dyeswap_rep2
Biological.replicate.1.of.6..negative.control
DglnR_without.vs..with.N_dyeswap_rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
WT.vs..DglnR.N_starvation_rep1
BatchCulture_LBTbroth_StationaryPhase_Replicate4
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate3
Biological.replicate.3.of.6..kanamycin.treatment
Biological.replicate.2.of.6..kanamycin.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.6.of.7..panaxydol.treatment
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