Module 324 Residual: 0.45
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.45 | 3.7e-20 | 0.000034 | 85 | 20 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 3.7e-20 | |
| Motif 2 |
 |
| e-value: 0.000034 |
| MSMEG_4560 ABC Fe3+-siderophores transporter, periplasmic binding protein (Periplasmic binding protein) | MSMEG_1371 Phosphomannose isomerase-like protein (EC 5.3.1.8) (Uncharacterized protein) |
| MSMEG_1369 LacI-family protein transcriptional regulator (LacI-family transcriptional regulator) (EC 5.1.1.1) | MSMEG_1370 2-deoxy-scyllo-inosamine dehydrogenase (EC 1.1.1.-) |
| MSMEG_2114 Glucose-6-phosphate isomerase, putative (EC 5.3.1.9) (Uncharacterized protein) | MSMEG_2237 Anaerobic dehydrogenase, typically |
| MSMEG_2113 Uncharacterized protein | MSMEG_2236 Putative thiolase (Thiolase) (EC 2.3.1.176) |
| MSMEG_4557 ABC transporter, ATP-binding protein (Putative iron ABC transporter, ATP-binding protein) (EC 3.6.3.34) | MSMEG_5032 Putative transcriptional regulator (Transcriptional regulator, HxlR family) |
| MSMEG_6062 ABC transporter, ATP-binding protein (EC 3.6.3.-) (Fe uptake system permease) | MSMEG_4561 ABC Fe3+-siderophores transporter, periplasmic binding protein (Putative ABC transporter periplasmic solute-binding protein) |
| MSMEG_6063 Fe uptake system integral membrane protein (Transport system permease) | MSMEG_5034 Uncharacterized protein |
| MSMEG_1374 Ribose ABC transporter, periplasmic binding protein | MSMEG_6064 Lipoprotein (Putative iron chelate uptake ABC transporter, solute-binding protein) |
| MSMEG_1373 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components | MSMEG_4559 ABC transporter, membrane spanning protein |
| MSMEG_1372 ABC transporter ATP-binding protein (Sugar ABC transporter, ATP binding protein) (EC 3.6.3.-) | MSMEG_2238 Aldehyde dehydrogenase (EC 1.2.1.3) (Aldehyde dehydrogenase (NAD) family protein) (EC 1.2.1.-) |
KO_stationary.phase_rep1
KO_stationary.phase_rep2
WT.vs..DamtR.without.N_rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.3.of.6..kanamycin.treatment
Biological.replicate.4.of.6..negative.control
dosR.WT_Replicate4
Bedaquiline.vs..DMSO.30min
WT.with.vs..without.N_dye.swap_rep1
MB100pruR.vs..MB100..rep.3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
dosR.WT_Replicate1
Biological.replicate.2.of.6..kanamycin.treatment
KO_log.phase_rep1
Plogcy5plogcy3slide110norm
Biological.replicate.7.of.7..falcarinol.treatment
MB100pruR.vs..MB100.rep.4
MB100pruR.vs..MB100.rep.2
DglnR_without.vs..with.N_rep2
Biological.replicate.1.of.6..kanamycin.treatment
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.1.of.7..ethambutol.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
rel.knockout.rep1
Biological.replicate.4.of.6..kanamycin.treatment
DamtR.with.vs..DamtR.without.N_.rep1
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.3.of.6..isoniazid.treatment
X0.6..vs..50..air.saturation.Replicate.1
X3dbfcy5plogcy3slide601norm
Sub.MIC.INH
X0.6..vs..50..air.saturation.Replicate.5
WT.vs..DamtR.N.surplus_rep2
WT.vs..DamtR.N.surplus_rep1
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
Biological.replicate.5.of.6..kanamycin.treatment
mc2155.vs.Dcrp1.replicate.1
X3dbfcy3plogcy5slide607norm
mc2155.vs.Dcrp1.replicate.4
Biological.replicate.3.of.6..negative.control
dcpA.knockout.rep2
dcpA.knockout.rep1
X3dbfcy5plogcy3slide603norm
Biological.replicate.5.of.6..negative.control
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
stphcy3plogcy5slide581norm
WT_log.phase_rep1
DglnR_without.vs..with.N_rep1
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
X2.5..vs..50..air.saturation.Replicate.3
WT_stationary.phase_rep2
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
Biological.replicate.5.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.4
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Slow.vs..Fast.Replicate.1
WT.vs..DglnR.N_starvation_dye.swap_rep2
Biological.replicate.7.of.7..panaxydol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
X4dbfcy5plogcy3slide480norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
Wild.type.rep2.x
WT.vs..DamtR.N.surplus_.dyeswap_rep1
WT.with.vs..without.N_rep2
WT.vs..DamtR.N.surplus_dyeswap_rep2
DglnR_without.vs..with.N_dyeswap_rep2
DglnR_without.vs..with.N_dyeswap_rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
dosR.WT_Replicate2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.4.of.7..panaxydol.treatment
Bedaquiline.vs..DMSO.120min
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