Module 343 Residual: 0.52
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.52 | 2.5e-25 | 0.055 | 72 | 31 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 2.5e-25 | |
| Motif 2 |
 |
| e-value: 0.055 |
| MSMEG_3053 DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega) | MSMEG_0071 Uncharacterized protein |
| MSMEG_3054 Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase) (EC 4.1.1.36) | MSMEG_6427 Superoxide dismutase [Mn] (EC 1.15.1.1) |
| MSMEG_4775 Enoyl-CoA hydratase (EC 4.2.1.17) (Enoyl-CoA hydratase/isomerase family protein) | MSMEG_5018 Adenylate and Guanylate cyclase catalytic domain protein (Adenylate/guanylate cyclase) (EC 4.6.1.1) |
| MSMEG_2996 Luciferase family protein (Uncharacterized protein) | MSMEG_0132 Conserved hypothetical integral membrane protein Yrbe1a (Uncharacterized protein) |
| MSMEG_6467 DNA protection during starvation protein (EC 1.16.-.-) | MSMEG_0136 MCE-family protein MCE1c (Virulence factor Mce family protein, putative) |
| MSMEG_2994 Amidohydrolase 2 (Amidohydrolase family protein) | MSMEG_0137 MCE-family protein MCE1d (Virulence factor mce family protein) |
| MSMEG_2995 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein) | MSMEG_4125 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short-chain dehydrogenase/reductase SDR) |
| MSMEG_2992 Putative acyl-CoA dehydrogenase | MSMEG_4126 Hydrolase, isochorismatase family protein |
| MSMEG_2993 Acyl-CoA dehydrogenase (Acyl-CoA dehydrogenase, C-domain protein) | MSMEG_5450 Redox-sensitive transcriptional activator SoxR |
| MSMEG_1977 Alcohol dehydrogenase (Zn-dependent alcohol dehydrogenase) (EC 1.1.1.1) | MSMEG_5091 Uncharacterized protein |
| MSMEG_1976 Uncharacterized protein | MSMEG_1971 Propane monooxygenase hydroxylase alpha subunit (EC 1.14.13.25) (Propane monooxygenase hydroxylase large subunit) |
| MSMEG_1979 Antibiotic biosynthesis monooxygenase | MSMEG_5026 Uncharacterized protein |
| MSMEG_1978 60 kDa chaperonin | MSMEG_1972 Methane monooxygenase component C (EC 1.14.13.25) (Propane monooxygenase reductase) (EC 1.18.1.3) |
| MSMEG_6398 Antigen 85-A (EC 2.3.1.-) (Putative esterase) | MSMEG_1975 Amidohydrolase 2 |
| MSMEG_5448 Arginine deiminase (ADI) (EC 3.5.3.6) (Arginine dihydrolase) | MSMEG_1974 Propane monooxygenase coupling protein |
| MSMEG_5406 Uncharacterized protein |
KO_stationary.phase_rep1
WT.vs..DglnR.N_starvation_rep2
WT.vs..DamtR.without.N_rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
WT.vs..DamtR.without.N_rep2
M..smegmatis.Acid.NO.treated
Plogcy5plogcy3slide110norm
Wild.type.rep1.x
MB100pruR.vs..MB100..rep.3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
KO_log.phase_rep1
WT.vs..DamtR.N.surplus_dyeswap_rep2
X3dbfcy5plogcy3slide601norm
Wild.type.rep1.y
Biological.replicate.6.of.6..negative.control
WT.vs..DamtR.without.N_.dyeswap_rep2
Biological.replicate.1.of.6..kanamycin.treatment
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.5.of.7..panaxydol.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
X4XR.rep1
Biological.replicate.3.of.7..falcarinol.treatment
Biological.replicate.6.of.7..panaxydol.treatment
Bedaquiline.vs..DMSO.15min
DamtR.with.vs..DamtR.without.N_.rep1
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.4.of.6..kanamycin.treatment
WT_log.phase_rep2
X0.6..vs..50..air.saturation.Replicate.3
X0.6..vs..50..air.saturation.Replicate.2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
WT.vs..DglnR.N_starvation_dye.swap_rep2
WT.vs..DamtR.N.surplus_rep1
dosR.WT_Replicate4
Wild.type.rep2.y
Biological.replicate.2.of.7..ethambutol.treatment
WT.vs..DamtR.N.surplus_rep2
dcpA.knockout.rep2
dcpA.knockout.rep1
X2.5..vs..50..air.saturation.Replicate.4
stphcy3plogcy5slide581norm
X2.5..vs..50..air.saturation.Replicate.1
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
WT.with.vs..without.N_dye.swap_rep2
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.6.of.6..isoniazid.treatment
dosR.WT_Replicate2
Slow.vs..Fast.Replicate.4
Slow.vs..Fast.Replicate.5
Biological.replicate.5.of.6..isoniazid.treatment
Slow.vs..Fast.Replicate.1
Slow.vs..Fast.Replicate.2
Biological.replicate.7.of.7..panaxydol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
X4dbfcy5plogcy3slide480norm
X4dbfcy5plogcy3slide901norm
Wild.type.rep2.x
WT.vs..DamtR.N.surplus_.dyeswap_rep1
WT.with.vs..without.N_rep2
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
Biological.replicate.1.of.6..negative.control
X2XR.rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate4
BatchCulture_LBTbroth_StationaryPhase_Replicate2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.3.of.6..negative.control
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