Module 351 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	0.00000000028	0.0000027	83	20	20160204

Motifs

Motif 1
	e-value: 0.00000000028
Motif 2
	e-value: 0.0000027

Module Plots

Members

MSMEG_0982 Immunogenic protein	MSMEG_4454 L-threonine aldolase, low-specificity (EC 4.1.2.5)
MSMEG_2707 Uncharacterized protein	MSMEG_1150 Conserved secreted protein (Uncharacterized protein)
MSMEG_1891 Uncharacterized protein	MSMEG_4381 Acetamidase/Formamidase (Amidase)
MSMEG_5668 Putative transcriptional regulator	MSMEG_2922 Uncharacterized protein
MSMEG_0984 Trap transporter, 4tm/12tm fusion protein	MSMEG_2705 Hydrogenase expression/formation protein HypE
MSMEG_1889 GTPase EngC (Putative ribosome small subunit-dependent GTPase RsgA)	MSMEG_4382 Dehydrogenase/reductase SDR family protein member 10 (EC 1.1.-.-) (Short-chain dehydrogenase/reductase SDR)
MSMEG_4771 Uncharacterized protein	MSMEG_2706 Phosphoheptose isomerase
MSMEG_1890 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)	MSMEG_2923 Dehydrogenase/reductase SDR family protein member 1 (EC 1.1.-.-) (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_5670 Efflux membrane protein	MSMEG_5671 YbaK/prolyl-tRNA synthetase associated region
MSMEG_2155 Alcohol dehydrogenase zinc-binding domain protein (Trans-2-enoyl-CoA reductase) (EC 1.3.1.38)	MSMEG_1149 Uncharacterized protein

Conditions

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.4.of.6..negative.control

dcpA.knockout.rep2

Mycobacterium.smegmatis.Spheroplast.induced

Wild.type.rep2.x

Biological.replicate.4.of.6..isoniazid.treatment

dosR.WT_Replicate3

dosR.WT_Replicate2

dosR.WT_Replicate1

KO_log.phase_rep2

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

MB100pruR.vs..MB100.rep.2

DglnR_without.vs..with.N_rep2

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

rel.knockout.rep2

X4XR.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

WT.vs..DamtR.without.N_.dyeswap_rep1

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

Biological.replicate.6.of.7..ethambutol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

Wild.type.rep2.y

Biological.replicate.2.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.4

X0.6..vs..50..air.saturation.Replicate.4

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

Biological.replicate.2.of.6..isoniazid.treatment

WT_log.phase_rep2

X2.5..vs..50..air.saturation.Replicate.5

stphcy3plogcy5slide581norm

DglnR_without.vs..with.N_rep1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.2

Biological.replicate.7.of.7..panaxydol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

Biological.replicate.1.of.7..falcarinol.treatment

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..panaxydol.treatment

Comments