Module 357 Residual: 0.58Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.58	0.0000004	110	76	30	20160204

Motifs

Motif 1
	e-value: 0.0000004
Motif 2
	e-value: 110

Module Plots

Members

MSMEG_6717 Oxidoreductase, Gfo/Idh/MocA family protein	MSMEG_6907 MmcI protein
MSMEG_1953 Transcriptional regulator WhiB7	MSMEG_2567 Cyclohexanone monooxygenase (EC 1.14.13.22) (Probable monooxygenase) (EC 1.14.13.-)
MSMEG_5632 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short-chain dehydrogenase/reductase SDR)	MSMEG_6474 Nucleoside-diphosphate-sugar epimerase
MSMEG_5633 AMP-dependent synthetase and ligase (EC 6.2.1.3) (Feruloyl-CoA synthetase)	MSMEG_2565 4-hydroxy-2-oxovalerate aldolase (EC 4.1.2.-) (HpcH/HpaI aldolase) (EC 4.1.2.20)
MSMEG_5630 Transcriptional regulator, GntR family protein (Transcriptional regulatory protein (Probably GntR-family))	MSMEG_2564 Alcohol dehydrogenase, zinc-binding protein (Oxidoreductase, zinc-binding dehydrogenase family protein)
MSMEG_5631 AMP-dependent synthetase and ligase (EC 6.2.1.26)	MSMEG_2563 Cytochrome P450 superfamily protein
MSMEG_3423 IclR family transcriptional regulator (Probable IclR family protein regulator)	MSMEG_0934 Uncharacterized protein
MSMEG_3379 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.-)	MSMEG_2783 Uncharacterized protein
MSMEG_0470 Carboxylic ester hydrolase (EC 3.1.1.-)	MSMEG_0344 Uncharacterized protein
MSMEG_4974 Rrf2 family protein (Putative transcriptional regulator) (Transcriptional regulator, BadM/Rrf2 family)	MSMEG_2568 Alpha/beta hydrolase fold-3 (LipW protein)
MSMEG_2973 Peptidyl-prolyl cis-trans isomerase	MSMEG_0932 ROK family protein
MSMEG_0933 D-inositol 3-phosphate glycosyltransferase (EC 2.4.1.250) (N-acetylglucosamine-inositol-phosphate N-acetylglucosaminyltransferase) (GlcNAc-Ins-P N-acetylglucosaminyltransferase)	MSMEG_1119 Glutamine amidotransferase, class I (Peptidase C26) (EC 4.1.3.27)
MSMEG_2906 Uncharacterized protein	MSMEG_2566 3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase (EC 1.1.1.53)
MSMEG_3805 Oxidoreductase, short chain dehydrogenase/reductase family protein	MSMEG_0930 Serine 3-dehydrogenase (EC 1.1.1.276) (Short-chain dehydrogenase/reductase SDR)
MSMEG_5215 Uncharacterized protein	MSMEG_1794 Dehydrogenase

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

dcpA.knockout.rep2

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.1.of.6..negative.control

Wild.type.rep3

KO_log.phase_rep2

KO_log.phase_rep1

Biological.replicate.7.of.7..falcarinol.treatment

Wild.type.rep1.x

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep2

M..smegmatis.Acid.NO.treated

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

WT.vs..DglnR.N_starvation_dye.swap_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

WT_log.phase_rep2

WT.with.vs..without.N_dye.swap_rep1

X3dbfcy3plogcy5slide607norm

DglnR_without.vs..with.N_rep1

X4dbfcy5plogcy3slide480norm

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X2.5..vs..50..air.saturation.Replicate.1

Biological.replicate.2.of.6..negative.control

Biological.replicate.6.of.6..isoniazid.treatment

Biological.replicate.4.of.6..isoniazid.treatment

mc2155.vs.Dcrp1.replicate.3

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

X3dbfcy5plogcy3slide603norm

Biological.replicate.5.of.6..kanamycin.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.5.of.7..falcarinol.treatment

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Biological.replicate.4.of.6..kanamycin.treatment

Bedaquiline.vs..DMSO.120min

Comments