Module 376 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	0.000000086	0.000000032	80	34	20160204

Motifs

Motif 1
	e-value: 0.000000086
Motif 2
	e-value: 0.000000032

Module Plots

Members

MSMEG_5122 4Fe-4S ferredoxin, iron-sulfur binding protein (Ferredoxin)	MSMEG_3654 Protein translocase subunit SecA 2
MSMEG_5121 Aminotransferase, classes I and II (N-succinyldiaminopimelate aminotransferase) (EC 2.6.1.-)	MSMEG_3655 ABC transporter domain protein (EC 3.-.-.-) (ABC transporter, permease/ATP-binding protein)
MSMEG_6480 Putative transcriptional regulatory protein (Transcriptional regulator, TetR family)	MSMEG_6457 Oxidoreductase molybdopterin binding domain, putative
MSMEG_2743 Transcriptional repressor NrdR	MSMEG_6456 Uncharacterized protein
MSMEG_4031 Uncharacterized protein	MSMEG_3066 Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
MSMEG_6656 Phage integrase-like protein SAM-like protein (Uncharacterized protein)	MSMEG_1854 Valosin containing protein-1
MSMEG_3656 ABC transporter, permease/ATP-binding protein (Drug-transport transmembrane ATP-binding protein ABC transporter)	MSMEG_1855 TPR repeat protein (Tetratricopeptide repeat protein, putative)
MSMEG_3982 Acyl-CoA dehydrogenase (EC 1.3.99.-)	MSMEG_1294 Allantoicase (Putative allantoicase (Allantoate amidinohydrolase)) (EC 3.5.3.4)
MSMEG_3981 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)	MSMEG_1295 5-hydroxyisourate hydrolase (HIU hydrolase) (HIUHase) (EC 3.5.2.17)
MSMEG_1411 Uncharacterized protein (Universal stress protein family protein)	MSMEG_1296 Uricase (EC 1.7.3.3)
MSMEG_1203 Methoxy mycolic acid synthase 1 (EC 2.1.1.-)	MSMEG_1297 Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3)
MSMEG_2196 Sensory box/response regulator (Uncharacterized protein)	MSMEG_1291 Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein (EC 1.17.1.4) (Putative oxidoreductase)
MSMEG_1205 Cyclopropane-fatty-acyl-phospholipid synthase 1 (EC 2.1.1.79) (Cyclopropane-fatty-acyl-phospholipid synthase 1 Cmaa1 (Cyclopropane fatty acid synthase) (Cfa synthase) (Cyclopropane mycolic acid synthase 1))	MSMEG_1292 FAD binding domain in molybdopterin dehydrogenase protein
MSMEG_6081 Uncharacterized protein	MSMEG_1293 Xanthine/uracil permease (Xanthine/uracil permeases family protein)
MSMEG_0839 ATP-dependent protease La (LON) domain subfamily protein (Peptidase S16, lon-like protein) (EC 3.4.21.53)	MSMEG_1298 Guanine deaminase (Putative guanine deaminase) (EC 3.5.4.3)
MSMEG_5132 GTP-binding protein TypA/BipA (GTP-binding translation elongation factor TypA) (EC 3.6.5.3)	MSMEG_0026 Cell division protein CrgA
MSMEG_5135 Uncharacterized protein	MSMEG_0027 Uncharacterized protein

Conditions

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.1.of.6..negative.control

MB100pruR.vs..MB100..rep.3

dosR.WT_Replicate2

KO_log.phase_rep2

Wild.type.rep2.y

dosR.WT_Replicate4

X3dbfcy5plogcy3slide601norm

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

WT.vs..DglnR.N_starvation_dye.swap_rep2

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT_log.phase_rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.2.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

WT.vs..DamtR.N.surplus_rep1

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..negative.control

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.2.of.6..isoniazid.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Bedaquiline.vs..DMSO.60min

Biological.replicate.2.of.6..kanamycin.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Biological.replicate.7.of.7..panaxydol.treatment

dosR.WT_Replicate3

X3dbfcy5plogcy3slide603norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.vs..DglnR.N_starvation_rep1

Wild.type.rep1.x

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Biological.replicate.4.of.6..kanamycin.treatment

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments