Module 382 Residual: 0.52Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.52	0.000044	0.033	81	23	20160204

Motifs

Motif 1
	e-value: 0.000044
Motif 2
	e-value: 0.033

Module Plots

Members

MSMEG_3111 Extracellular solute-binding protein (Extracellular solute-binding protein, family protein 1)	MSMEG_0834 Putative tuberculin related peptide (Tuberculin related peptide)
MSMEG_3110 Binding-protein-dependent transport systems inner membrane component	MSMEG_0506 ABC transporter, permease protein
MSMEG_5250 CalR9 protein	MSMEG_3366 Isonitrile hydratase, putative (ThiJ/PfpI)
MSMEG_6659 Uncharacterized protein	MSMEG_0835 Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)
MSMEG_5248 Acyl-[ACP] desaturase (Acyl-acyl-carrier protein desaturase DesA2) (EC 1.14.19.2)	MSMEG_0655 Glucose 1-dehydrogenase, putative (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_3108 ABC transporter related protein (ABC transporter, ATPase subunit)	MSMEG_3109 Binding-protein-dependent transport systems inner membrane component
MSMEG_5836 Uncharacterized protein	MSMEG_5355 Uncharacterized protein
MSMEG_0654 Uncharacterized protein	MSMEG_0636 Uncharacterized protein
MSMEG_4100 ABC transporter permease protein (ABC-type transport systems, permease component)	MSMEG_3417 Uncharacterized protein
MSMEG_0883 Amidohydrolase family protein (Amidohydrolase family protein/D-aminoacylase domain protein) (EC 3.5.2.3)	MSMEG_4099 ABC transporter permease protein (Binding-protein-dependent transport systems inner membrane component)
MSMEG_0836 Putative glutamate--cysteine ligase 2-1 (EC 6.3.2.2) (Gamma-glutamylcysteine synthetase 2-1) (GCS 2-1) (Gamma-GCS 2-1)	MSMEG_4098 ABC transporter ATP-binding protein
MSMEG_4101 ABC-type transporter, substrate binding protein

Conditions

Biological.replicate.4.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.30min

WT.vs..DamtR.without.N_rep1

Biological.replicate.3.of.6..kanamycin.treatment

WT.vs..DamtR.without.N_rep2

X3dbfcy5plogcy3slide601norm

Mycobacterium.smegmatis.Spheroplast.induced

Wild.type.rep2.x

Biological.replicate.4.of.7..ethambutol.treatment

X2XR.rep1

Biological.replicate.5.of.6..kanamycin.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

dosR.WT_Replicate1

KO_log.phase_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

dosR.WT_Replicate4

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep2

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.1.of.6..kanamycin.treatment

MB100pruR.vs..MB100.rep.1

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Wild.type.rep3

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

Biological.replicate.3.of.7..ethambutol.treatment

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.4.of.6..negative.control

dcpA.knockout.rep1

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.2

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Biological.replicate.2.of.6..kanamycin.treatment

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.vs..DglnR.N_starvation_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.5.of.7..falcarinol.treatment

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

dosR.WT_Replicate2

Plogcy5plogcy3slide113norm

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..panaxydol.treatment

Comments