Module 388 Residual: 0.59Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.59	0.0000088	51000	74	16	20160204

Motifs

Motif 1
	e-value: 0.0000088
Motif 2
	e-value: 51000

Module Plots

Members

MSMEG_5849 RelA/SpoT domain protein (Uncharacterized protein)	MSMEG_3454 Uncharacterized protein
MSMEG_2149 Uncharacterized protein	MSMEG_1193 TROVE domain protein
MSMEG_3303 Carboxylic ester hydrolase	MSMEG_4699 NAD-specific glutamate dehydrogenase (NAD-GDH) (EC 1.4.1.2) (NAD(+)-dependent glutamate dehydrogenase)
MSMEG_1247 Uncharacterized protein	MSMEG_2318
MSMEG_1494 Transcriptional regulatory protein DegU	MSMEG_4736 Uncharacterized protein
MSMEG_4378 Putative two-component system response regulator, LuxR family (Two-component system response regulator)	MSMEG_1082 Putative response regulator
MSMEG_1493 GAF sensor signal transduction histidine kinase (EC 2.7.13.3) (Sensor histidine kinase) (EC 2.7.3.-)	MSMEG_4737 Uncharacterized protein
MSMEG_0637 FAD dependent oxidoreductase (Iron-sulfur binding oxidoreductase)	MSMEG_5099 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

KO_log.phase_rep1

dcpA.knockout.rep2

dosR.WT_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.30min

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate3

dosR.WT_Replicate2

Biological.replicate.5.of.6..negative.control

stphcy5plogcy3slide487norm

Wild.type.rep2.y

Plogcy5plogcy3slide110norm

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO..45min

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

Biological.replicate.2.of.7..falcarinol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Biological.replicate.2.of.6..isoniazid.treatment

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

X3dbfcy5plogcy3slide601norm

X2.5..vs..50..air.saturation.Replicate.5

X2.5..vs..50..air.saturation.Replicate.2

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..ethambutol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X4dbfcy5plogcy3slide480norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.1.of.7..falcarinol.treatment

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

Biological.replicate.2.of.6..negative.control

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Sub.MIC.INH

Plogcy5plogcy3slide113norm

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

Comments