Module 392 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	6.6e-17	0.0026	79	31	20160204

Motifs

Motif 1
	e-value: 6.6e-17
Motif 2
	e-value: 0.0026

Module Plots

Members

MSMEG_4374 Agmatinase (EC 3.5.3.11)	MSMEG_2862 Uncharacterized protein
MSMEG_4373 Polysaccharide deacetylase (Polysaccharide deacetylase, putative)	MSMEG_2863 Conserved hypothetical secreted protein (Uncharacterized protein)
MSMEG_5839 Protease 2 (EC 3.4.21.83) (Protease II (Oligopeptidase B), PtrB) (EC 3.4.21.83)	MSMEG_2861 Uncharacterized protein
MSMEG_1847 4Fe-4S ferredoxin, iron-sulfur binding protein (EC 1.2.1.2)	MSMEG_4584 Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase)
MSMEG_1846 Polysulphide reductase, NrfD	MSMEG_3067 Bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase (Riboflavin biosynthesis protein RibD) (EC 1.1.1.193) (EC 3.5.4.26)
MSMEG_2065 YceI like family (YceI like family protein)	MSMEG_5588 Uncharacterized protein
MSMEG_2697 Conserved hypothetical membrane protein (Uncharacterized protein)	MSMEG_5358 Acetamidase/Formamidase family protein
MSMEG_6054 UPF0271 protein MSMEG_6054	MSMEG_0529 Probable serine/threonine-protein kinase PknK (EC 2.7.11.1) (Serine/threonine-protein kinase transcriptional regulatory protein PknK)
MSMEG_2699 Putative alanine rich transferase (Uncharacterized protein)	MSMEG_1942 Integral membrane protein (Putative membrane protein)
MSMEG_2698 Uncharacterized protein	MSMEG_6550 Uncharacterized protein
MSMEG_1749 Luciferase-like protein (EC 1.14.14.5) (Putative monooxygenase)	MSMEG_1199 Conserved integral membrane protein (Uncharacterized protein)
MSMEG_2719 Hydrogen:quinone oxidoreductase (EC 1.12.5.1)	MSMEG_4585 Ribokinase (EC 2.7.1.15) (Ribokinase Rbsk) (EC 2.7.1.15)
MSMEG_1200 Extracellular solute-binding protein family 3 (Serine/threonine-protein kinase PknD) (EC 2.7.11.1)	MSMEG_5841 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) (SAICAR synthetase)
MSMEG_2718 Iron-sulfur cluster-binding protein, Rieske family protein, putative	MSMEG_5842 Conserved transmembrane protein (Uncharacterized protein)
MSMEG_2650 Acyl-CoA dehydrogenase (Putative acyl-CoA dehydrogenase)	MSMEG_2720 NADH ubiquinone oxidoreductase 20 kDa subunit (EC 1.12.99.6) (NADH ubiquinone oxidoreductase, 20 kDa subunit)
MSMEG_2651 Alkanesulfonate monooxygenase family protein

Conditions

KO_stationary.phase_rep1

WT.vs..DglnR.N_starvation_rep2

WT.vs..DamtR.without.N_rep1

Wild.type.rep2.y

Biological.replicate.4.of.6..negative.control

Mycobacterium.smegmatis.Spheroplast.induced

dosR.WT_Replicate4

Biological.replicate.3.of.7..falcarinol.treatment

MB100pruR.vs..MB100..rep.3

KO_log.phase_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

WT.vs..DamtR.N.surplus_dyeswap_rep2

Wild.type.rep1.x

DglnR_without.vs..with.N_rep1

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

DglnR_without.vs..with.N_rep2

Biological.replicate.2.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.1

rel.knockout.rep2

Wild.type.rep3

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..panaxydol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.3

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

stphcy3plogcy5slide581norm

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

WT_log.phase_rep2

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

X2.5..vs..50..air.saturation.Replicate.1

Biological.replicate.5.of.6..isoniazid.treatment

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep2

WT_stationary.phase_rep1

X4XR.rep2

X4XR.rep1

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Biological.replicate.7.of.7..panaxydol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.3.of.6..kanamycin.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

Wild.type.rep2.x

X2XR.rep1

X2XR.rep2

Biological.replicate.5.of.7..falcarinol.treatment

Wild.type.rep1.y

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

Biological.replicate.4.of.6..kanamycin.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

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