Module 393 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	8.8e-17	0.000021	77	35	20160204

Motifs

Motif 1
	e-value: 8.8e-17
Motif 2
	e-value: 0.000021

Module Plots

Members

MSMEG_4205 Putative transcriptional regulator	MSMEG_3868 Uncharacterized protein
MSMEG_0785 Uncharacterized protein	MSMEG_1206 Uncharacterized protein
MSMEG_1987 Uncharacterized protein	MSMEG_3419 Uncharacterized protein
MSMEG_0513 Integral membrane protein (Uncharacterized protein)	MSMEG_4251 Cyclase/dehydrase
MSMEG_2692 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase)) (EC 2.7.8.5)	MSMEG_6147 Uncharacterized protein
MSMEG_2695 35 kDa protein (Phage shock protein A, PspA)	MSMEG_6146
MSMEG_4991 Uncharacterized protein	MSMEG_1192 M23 peptidase domain protein
MSMEG_4993 Uncharacterized protein	MSMEG_5722 Uncharacterized protein
MSMEG_4994 Flagella membrane glycoprotein 1B, putative (Uncharacterized protein)	MSMEG_1223 Uncharacterized protein
MSMEG_2774 Diguanylate cyclase (Ggdef) domain protein	MSMEG_2200 Formyltetrahydrofolate deformylase (EC 3.5.1.10) (Formyl-FH(4) hydrolase)
MSMEG_6782 Uncharacterized protein	MSMEG_5459 Uncharacterized protein
MSMEG_3867 ATPase family protein associated with various cellular activities (AAA)	MSMEG_1161 Binding-protein-dependent transport systems inner membrane component (Taurine transport system permease protein TauC)
MSMEG_3866 Uncharacterized protein	MSMEG_1986 Tartrate dehydrogenase (EC 1.1.1.93)
MSMEG_0036 Uncharacterized protein	MSMEG_3870 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)
MSMEG_4249 Uncharacterized protein	MSMEG_4250 Arsenite transporting ATPase (EC 3.6.3.16) (Putative membrane transport ATPase)
MSMEG_1160 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component (Putative ABC transporter component B)	MSMEG_1159 ABC transporter component A (ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic components-like protein)
MSMEG_3439 Uncharacterized protein	MSMEG_0237 ISMsm3, transposase (Transposase IS4 family protein)
MSMEG_3869 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.6..negative.control

X4XR.rep1

Biological.replicate.1.of.6..negative.control

MB100pruR.vs..MB100..rep.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

stphcy5plogcy3slide487norm

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.7.of.7..falcarinol.treatment

Wild.type.rep1.x

Wild.type.rep1.y

DglnR_without.vs..with.N_rep2

Biological.replicate.3.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

Biological.replicate.2.of.6..kanamycin.treatment

X0.6..vs..50..air.saturation.Replicate.5

Biological.replicate.6.of.7..ethambutol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Plogcy5plogcy3slide113norm

Slow.vs..Fast.Replicate.3

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

X3dbfcy5plogcy3slide601norm

WT.with.vs..without.N_dye.swap_rep1

stphcy3plogcy5slide581norm

WT_log.phase_rep1

DglnR_without.vs..with.N_rep1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

dosR.WT_Replicate3

WT.with.vs..without.N_dye.swap_rep2

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X3dbfcy5plogcy3slide603norm

Biological.replicate.5.of.6..kanamycin.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

dosR.WT_Replicate2

WT.with.vs..without.N_rep2

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Bedaquiline.vs..DMSO.120min

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..falcarinol.treatment

KO_log.phase_rep2

Comments