Module 399 Residual: 0.52Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.52	6.4e-23	260	79	35	20160204

Motifs

Motif 1
	e-value: 6.4e-23
Motif 2
	e-value: 260

Module Plots

Members

MSMEG_6092 Lsr2 protein (Protein lsr2)	MSMEG_3796 Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX [Includes: Lysine--tRNA ligase (EC 6.1.1.6) (Lysyl-tRNA synthetase) (LysRS); Phosphatidylglycerol lysyltransferase (EC 2.3.2.3) (Lysylphosphatidylglycerol synthetase) (LPG synthetase)]
MSMEG_5754 Gp41 protein	MSMEG_6539 Uncharacterized protein
MSMEG_1955 Uncharacterized protein	MSMEG_6875 Endoribonuclease L-PSP (EC 3.5.99.5) (Endoribonuclease L-PSP family protein)
MSMEG_0962 TetR-family protein transcriptional regulator (Transcriptional regulator, TetR family)	MSMEG_6282 KanY protein (Uncharacterized protein)
MSMEG_2080 Acyl-CoA dehydrogenase (EC 1.3.99.-) (Putative acyl-CoA dehydrogenase)	MSMEG_6283 FAD binding domain protein (FAD linked oxidase-like protein)
MSMEG_2081 Putative acyl-CoA dehydrogenase	MSMEG_4289 Amidohydrolase
MSMEG_1281 Uncharacterized protein	MSMEG_6284 Cyclopropane fatty-acyl-phospholipid synthase (EC 2.1.1.79) (Cyclopropane-fatty-acyl-phospholipid synthase)
MSMEG_1280 Hypothetical cytosolic protein (Uncharacterized protein)	MSMEG_0913 Methoxy mycolic acid synthase 1 (EC 2.1.1.-) (Mycolic acid synthase UmaA) (EC 2.1.1.79)
MSMEG_5834 Metallo-beta-lactamase superfamily protein	MSMEG_0182 Epoxide hydrolase (EC 3.3.2.-) (Epoxide hydrolase 1) (EC 3.3.2.9)
MSMEG_5267 Acyl CoA dehydrogenase (Glutaryl-CoA dehydrogenase) (EC 1.3.8.6)	MSMEG_5752 Uncharacterized protein
MSMEG_6254 Uncharacterized protein	MSMEG_3374 Uncharacterized protein
MSMEG_0330 Transcriptional regulator, LuxR family protein (Two-component response regulator) (EC 3.1.1.61)	MSMEG_2669 Dienelactone hydrolase (EC 3.1.1.45) (Hydrolase)
MSMEG_0331 Transcriptional regulator, LuxR family protein (Two-component system response regulator) (EC 3.1.1.61)	MSMEG_0381 Mmp14a protein (MmpS4) (Mmpl4a)
MSMEG_0332 2-nitropropane dioxygenase NPD (2-nitropropane dioxygenase, NPD)	MSMEG_0380 MmpS4 (MmpS4 protein)
MSMEG_6783 Integral membrane protein	MSMEG_0382 Mmpl4b (Putative transport protein) (Transmembrane protein)
MSMEG_2670 Thymidylate synthase (TS) (TSase) (EC 2.1.1.45)	MSMEG_0387 Rmt2 protein
MSMEG_5819 Pyridoxamine 5'-phosphate oxidase family protein (Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein)	MSMEG_1279 Uncharacterized protein MSMEG_1279/MSMEI_1241
MSMEG_6400 Conserved transmembrane protein (Probable conserved transmembrane protein)

Conditions

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.3.of.6..kanamycin.treatment

WT.vs..DamtR.without.N_rep2

DamtR.with.vs..DamtR.without.N_.rep1

dosR.WT_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

dosR.WT_Replicate3

Biological.replicate.5.of.6..negative.control

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

rel.knockout.rep2

X4XR.rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

WT_log.phase_rep2

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

Sub.MIC.INH

Biological.replicate.6.of.7..ethambutol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Wild.type.rep2.y

mc2155.vs.Dcrp1.replicate.1

stphcy3plogcy5slide581norm

X4dbfcy5plogcy3slide901norm

X3dbfcy5plogcy3slide603norm

dcpA.knockout.rep1

WT.vs..DamtR.N.surplus_rep1

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..negative.control

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Biological.replicate.3.of.7..falcarinol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_dyeswap_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.1.of.7..panaxydol.treatment

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

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