Module 400 Residual: 0.52
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.52 | 1.3e-20 | 0.000000000083 | 76 | 34 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 1.3e-20 | |
| Motif 2 |
 |
| e-value: 0.000000000083 |
| MSMEG_3945 Universal stress protein family protein | MSMEG_0277 Aminotransferase class-III (Putative aminotransferase) (EC 2.6.1.-) |
| MSMEG_1880 Hypothetical alanine arginine proline rich protein | MSMEG_1894 Short chain dehydrogenase |
| MSMEG_1882 Diacylglycerol O-acyltransferase (EC 2.3.1.20) | MSMEG_5565 Uncharacterized protein |
| MSMEG_6656 Phage integrase-like protein SAM-like protein (Uncharacterized protein) | MSMEG_1715 L-arabinose isomerase (EC 5.3.1.4) |
| MSMEG_5308 Uncharacterized protein | MSMEG_1714 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (L-ribulose-5-phosphate 4-epimerase UlaF) |
| MSMEG_0150 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Nicotinamide nucleotide transhydrogenase subunit beta) | MSMEG_6433 Uncharacterized protein |
| MSMEG_0151 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) (PntAB protein) | MSMEG_6432 Uncharacterized protein |
| MSMEG_0152 Alanine dehydrogenase/pyridine nucleotide transhydrogenase (NAD(P) transhydrogenase alpha subunit) (EC 1.6.1.2) | MSMEG_6435 Uncharacterized protein |
| MSMEG_0153 2-dehydropantoate 2-reductase (EC 1.1.1.169) | MSMEG_6434 Uncharacterized protein |
| MSMEG_0154 Pyruvate kinase (EC 2.7.1.40) | MSMEG_1713 Ribulokinase (EC 2.7.1.16) |
| MSMEG_1454 Uncharacterized protein | MSMEG_5849 RelA/SpoT domain protein (Uncharacterized protein) |
| MSMEG_0279 Amino acid permease (Amino acid permease-associated region) | MSMEG_0149 ThiC family protein (Thiamine biosynthesis protein thiC) |
| MSMEG_4368 Putative regulatory protein, FmdB family protein | MSMEG_0587 L-rhamnose 1-epimerase (EC 5.1.3.-) (Uncharacterized protein) |
| MSMEG_4323 Pyruvate dehydrogenase E1 component (PDH E1 component) (EC 1.2.4.1) | MSMEG_0586 Stas domain, putative |
| MSMEG_4322 Uncharacterized protein | MSMEG_3972 Transcriptional regulator, LysR family protein |
| MSMEG_2659 Alanine dehydrogenase (EC 1.4.1.1) | MSMEG_3970 Amidase (EC 3.5.1.4) (Glutamyl-tRNA(Gln) amidotransferase subunit A) (EC 6.3.5.-) |
| MSMEG_3493 Putative secreted protein (Uncharacterized protein) | MSMEG_2660 Transcriptional regulator, AsnC family protein |
KO_stationary.phase_rep2
WT.vs..DamtR.without.N_rep1
Biological.replicate.2.of.7..panaxydol.treatment
dcpA.knockout.rep2
Biological.replicate.4.of.6..negative.control
X4XR.rep1
Biological.replicate.4.of.7..ethambutol.treatment
Biological.replicate.4.of.6..isoniazid.treatment
MB100pruR.vs..MB100..rep.3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
dosR.WT_Replicate1
KO_log.phase_rep1
Biological.replicate.7.of.7..falcarinol.treatment
Wild.type.rep1.x
Wild.type.rep1.y
DglnR_without.vs..with.N_rep2
MB100pruR.vs..MB100.rep.2
WT.vs..DamtR.without.N_.dyeswap_rep2
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
rel.knockout.rep2
Bedaquiline.vs..DMSO..45min
Biological.replicate.1.of.7..falcarinol.treatment
Biological.replicate.3.of.7..ethambutol.treatment
X3dbfcy5plogcy3slide601norm
X0.6..vs..50..air.saturation.Replicate.3
DglnR_without.vs..with.N_rep1
X0.6..vs..50..air.saturation.Replicate.5
Slow.vs..Fast.Replicate.2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
Plogcy5plogcy3slide113norm
Biological.replicate.5.of.6..kanamycin.treatment
Biological.replicate.2.of.7..ethambutol.treatment
X0.6..vs..50..air.saturation.Replicate.4
Biological.replicate.5.of.7..panaxydol.treatment
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
WT.vs..DamtR.N.surplus_rep1
Plogcy5plogcy3slide111norm
Biological.replicate.2.of.6..isoniazid.treatment
WT_log.phase_rep2
WT.with.vs..without.N_dye.swap_rep1
stphcy3plogcy5slide581norm
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
X2.5..vs..50..air.saturation.Replicate.3
Biological.replicate.3.of.6..kanamycin.treatment
Biological.replicate.6.of.6..isoniazid.treatment
Biological.replicate.5.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.4
Slow.vs..Fast.Replicate.5
dosR.WT_Replicate3
WT.with.vs..without.N_dye.swap_rep2
Biological.replicate.4.of.7..falcarinol.treatment
Slow.vs..Fast.Replicate.1
Biological.replicate.6.of.7..ethambutol.treatment
Biological.replicate.3.of.7..falcarinol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
mc2155.pMind..vs.mc2155.pMind.6189.replicate.4
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
X4dbfcy5plogcy3slide901norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_dyeswap_rep2
WT.with.vs..without.N_rep2
WT.with.vs..without.N_rep1
DglnR_without.vs..with.N_dyeswap_rep2
Biological.replicate.1.of.6..negative.control
DglnR_without.vs..with.N_dyeswap_rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
WT.vs..DamtR.N.surplus_rep2
Bedaquiline.vs..DMSO.120min
Comments
Log in to post comments