Module 401 Residual: 0.57Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.57	3.1e-21	1100	78	29	20160204

Motifs

Motif 1
	e-value: 3.1e-21
Motif 2
	e-value: 1100

Module Plots

Members

MSMEG_6888 Integrase catalytic region (Transposase subunit)	MSMEG_2961 Protein translocase subunit SecD
MSMEG_3644 Transcriptional regulator, MerR family protein	MSMEG_5173 O-methyltransferase Omt (O-methyltransferase, putative)
MSMEG_3287 Alpha/beta hydrolase fold protein (EC 3.8.1.5) (Hydrolase, alpha/beta fold family protein)	MSMEG_2964 Adenine phosphoribosyltransferase (APRT) (EC 2.4.2.7)
MSMEG_3310 Integral membrane protein	MSMEG_1737 Pseudouridine synthase (RNA pseudouridine synthase family protein)
MSMEG_3288 LysM domain protein (Peptidoglycan-binding LysM)	MSMEG_6347 Uncharacterized protein
MSMEG_3648 Glycine cleavage system H protein	MSMEG_2786 Hydrolase, alpha/beta fold family protein
MSMEG_4296 Protease (Tripeptidyl-peptidase B Serine peptidase MEROPS family S33)	MSMEG_2785 Alpha-(1->3)-arabinofuranosyltransferase (EC 2.4.2.47) (Arabinofuranan 3-O-arabinosyltransferase) (arabinofuranosyltransferase C) (aftC)
MSMEG_3117 Cytochrome aa3 controlling protein (Unidentified antibiotic-transport integral membrane ABC transporter)	MSMEG_4965 Uncharacterized protein
MSMEG_0627 Glycosyl transferase, family protein 39	MSMEG_0614 Putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_0614/MSMEI_0598 (EC 2.1.1.-)
MSMEG_2396 Putative conserved secreted protein (Uncharacterized protein)	MSMEG_6308 Uncharacterized protein
MSMEG_5417 Uncharacterized protein	MSMEG_2383 Glutamate--tRNA ligase (EC 6.1.1.17) (Glutamyl-tRNA synthetase) (GluRS)
MSMEG_1127 Probable conserved transmembrane protein (Putative conserved transmembrane protein)	MSMEG_2382 5-carboxymethyl-2-hydroxymuconate delta-isomerase (Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase)
MSMEG_4089 Transposase subunit	MSMEG_2875 Alpha/beta hydrolase fold-3 (Esterase)
MSMEG_2963 Bacterial extracellular solute-binding protein, family protein 5 (Extracellular solute-binding protein)	MSMEG_5172 Uncharacterized protein
MSMEG_2962 Protein-export membrane protein SecF

Conditions

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

Biological.replicate.4.of.6..negative.control

X4XR.rep1

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.4.of.6..isoniazid.treatment

Wild.type.rep3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

DglnR_without.vs..with.N_rep1

Biological.replicate.7.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep2

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

WT.with.vs..without.N_dye.swap_rep1

Biological.replicate.3.of.7..falcarinol.treatment

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Biological.replicate.3.of.7..ethambutol.treatment

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

WT.vs..DamtR.N.surplus_rep2

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.2.of.6..isoniazid.treatment

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

Biological.replicate.5.of.6..negative.control

X4dbfcy5plogcy3slide480norm

Biological.replicate.5.of.6..kanamycin.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

dosR.WT_Replicate2

WT.with.vs..without.N_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

Biological.replicate.1.of.6..negative.control

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

Biological.replicate.2.of.6..negative.control

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Biological.replicate.3.of.6..negative.control

Comments