Module 405 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	2.7e-17	0.00000000000017	77	36	20160204

Motifs

Motif 1
	e-value: 2.7e-17
Motif 2
	e-value: 0.00000000000017

Module Plots

Members

MSMEG_3132 DNA-binding protein (Transcriptional regulator, XRE family)	MSMEG_5298 Uncharacterized protein
MSMEG_0510 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit (EC 4.1.2.40)	MSMEG_6496 ABC transporter related protein (EC 3.6.3.36) (Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit)
MSMEG_3507 Fructose-bisphosphate aldolase (Fructose-bisphosphate aldolase class-I) (EC 4.1.2.13)	MSMEG_3418 Uncharacterized protein
MSMEG_0512 BadF/BadG/BcrA/BcrD ATPase family protein	MSMEG_5497 Uncharacterized protein
MSMEG_3227 Pyruvate kinase (EC 2.7.1.40)	MSMEG_2513 Uncharacterized protein
MSMEG_5634 Uncharacterized protein	MSMEG_6741 Antar domain protein
MSMEG_2556 Beta-glucosidase (EC 3.2.1.21) (Glycoside hydrolase family 3 domain protein) (EC 3.2.1.21)	MSMEG_4383 Conserved transmembrane transport protein MmpL1 (MmpL5 protein)
MSMEG_2552 Aldehyde dehydrogenase (NAD) family protein (EC 1.2.1.-) (Putative aldehyde dehydrogenase) (EC 1.2.1.3)	MSMEG_1077 Uncharacterized protein
MSMEG_4685 Oxidoreductase	MSMEG_5549 Uncharacterized protein
MSMEG_2162 MmcJ protein	MSMEG_4691 HNH nuclease
MSMEG_0706 4-carboxy-4-hydroxy-2-oxoadipate aldolase (4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase) (EC 4.1.-.-)	MSMEG_0511 Putative sugar isomerase, AgaS family protein (Putative tagatose-6-phosphate ketose/aldose isomerase)
MSMEG_0702 Luciferase-like monooxygenase superfamily (EC 1.14.14.5) (Monooxygenase)	MSMEG_0441 Uncharacterized protein
MSMEG_0590 Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase (EC 1.1.1.1) (EC 4.1.2.19)	MSMEG_0446 Amino acid permease-associated region (Putrescine importer)
MSMEG_0214 L-sorbosone dehydrogenase (SMP-30/Gluconolaconase/LRE-like region)	MSMEG_6229 Glycerol kinase (EC 2.7.1.30)
MSMEG_6310 4-hydroxybutyrate coenzyme A transferase (EC 2.8.3.-)	MSMEG_0589 L-rhamnose isomerase (EC 5.3.1.-) (EC 5.3.1.14)
MSMEG_0708 LysR family regulatory protein (Transcriptional regulator, LysR family protein)	MSMEG_0445 Amidohydrolase family protein (Uncharacterized protein)
MSMEG_0509 DeoR-family transcriptional regulator (Transcriptional regulatory protein)	MSMEG_0588 Major facilitator superfamily (MFS) family inositol transporter (Putative rhamnose tranport protein, MFS family protein)
MSMEG_0492 Conserved hypothetical integral membrane protein (Uncharacterized protein)	MSMEG_4158 Putative transposase (Uncharacterized protein)

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

Biological.replicate.1.of.6..negative.control

Wild.type.rep3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.4.of.6..kanamycin.treatment

Wild.type.rep2.y

Wild.type.rep2.x

Wild.type.rep1.x

Wild.type.rep1.y

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.7..falcarinol.treatment

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.5

Slow.vs..Fast.Replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

Plogcy5plogcy3slide113norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep1

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

X2.5..vs..50..air.saturation.Replicate.4

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..negative.control

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.5.of.6..negative.control

Biological.replicate.5.of.6..kanamycin.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.N.surplus_dyeswap_rep2

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.120min

Comments