Module 439 Residual: 0.53Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.53	0.0000000000000088	0.000045	80	17	20160204

Motifs

Motif 1
	e-value: 0.0000000000000088
Motif 2
	e-value: 0.000045

Module Plots

Members

MSMEG_1599 Alternative RNA polymerase sigma-D factor, SigD (RNA polymerase sigma-70 factor)	MSMEG_0773 Acetyltransferase
MSMEG_0557 Uncharacterized protein	MSMEG_4892 Uncharacterized protein
MSMEG_5057 Conserved hypothetical membrane protein (Uncharacterized protein)	MSMEG_0170 Major facilitator superfamily MFS_1 (Transmembrane transport protein)
MSMEG_4893 Putative neutral zinc metallopeptidase	MSMEG_1600 Uncharacterized protein
MSMEG_3095 D-ribose-binding periplasmic protein (EC 3.6.3.17)	MSMEG_5061 Bacterial extracellular solute-binding protein
MSMEG_5058 ABC transporter, ATP-binding protein SugC (Sugar-transport ATP-binding protein ABC transporter sugC) (EC 3.6.3.25)	MSMEG_5060 ABC sugar transporter, permease component (ABC transporter, permease protein SugA)
MSMEG_5059 ABC transporter, permease protein SugB (Sugar-transport integral membrane protein ABC transporter SugB)	MSMEG_0169 Uncharacterized protein
MSMEG_0558 Uncharacterized protein	MSMEG_3097 Phosphoenolpyruvate carboxylase (PEPC) (PEPCase) (EC 4.1.1.31)
MSMEG_0772 Phytase (Uncharacterized protein)

Conditions

KO_stationary.phase_rep2

WT.vs..DglnR.N_starvation_rep2

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X4XR.rep1

Biological.replicate.4.of.6..negative.control

Wild.type.rep2.x

Biological.replicate.4.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.30min

Biological.replicate.4.of.6..isoniazid.treatment

KO_log.phase_rep2

Wild.type.rep2.y

WT.vs..DamtR.N.surplus_dyeswap_rep2

Wild.type.rep1.x

MB100pruR.vs..MB100.rep.4

Biological.replicate.6.of.6..negative.control

DglnR_without.vs..with.N_rep2

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.7.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.60min

WT.with.vs..without.N_dye.swap_rep1

Biological.replicate.3.of.7..falcarinol.treatment

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.6.of.7..falcarinol.treatment

M..smegmatis.Acid.NO.treated

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.2.of.6..kanamycin.treatment

Biological.replicate.5.of.7..falcarinol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

WT.vs..DamtR.N.surplus_rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

dcpA.knockout.rep1

Biological.replicate.5.of.6..negative.control

WT_log.phase_rep2

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..negative.control

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..isoniazid.treatment

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X3dbfcy5plogcy3slide603norm

Wild.type.rep3

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

DglnR_without.vs..with.N_dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

X4dbfcy3plogcy5slide903norm

Comments