Module 445 Residual: 0.50Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.50	670	1700	72	31	20160204

Motifs

Motif 1
	e-value: 670
Motif 2
	e-value: 1700

Module Plots

Members

MSMEG_5324 Ornithine-acylacyl carrier protein N-acyltransferase (Uncharacterized protein)	MSMEG_3253 Uncharacterized protein
MSMEG_5556 MFS permease	MSMEG_1964 FAD-dependent oxygenase (Mitomycin radical oxidase) (EC 1.5.3.-)
MSMEG_4548 Acetyltransferase, GNAT family (Acetyltransferase, gnat family protein)	MSMEG_5708 Uncharacterized protein
MSMEG_3014 Uncharacterized protein	MSMEG_3994 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_4640 Secreted protein	MSMEG_1655 Alpha/beta hydrolase fold protein (Hydrolase, alpha/beta fold family protein, putative)
MSMEG_0354 Uncharacterized protein	MSMEG_1753 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 (EC 3.2.2.9) (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase) (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1)
MSMEG_6031 Putative short-chain type dehydrogenase/reductase MSMEG_6031/MSMEI_5872 (EC 1.1.1.-)	MSMEG_1755 Anti-sigm factor, ChrR
MSMEG_0604 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC 1.1.1.95) (Glyoxylate reductase) (EC 1.1.1.26)	MSMEG_6049 Secreted protein
MSMEG_0070 Uncharacterized protein	MSMEG_3089 Deoxyribose-phosphate aldolase (DERA) (EC 4.1.2.4) (2-deoxy-D-ribose 5-phosphate aldolase) (Phosphodeoxyriboaldolase)
MSMEG_0231 Uncharacterized protein	MSMEG_5868 Uncharacterized protein
MSMEG_3716 Uncharacterized protein	MSMEG_1099 Uncharacterized protein
MSMEG_4574 DNA-binding protein	MSMEG_2444 Dienelactone hydrolase (EC 3.1.1.45) (Dienelactone hydrolase family protein)
MSMEG_4633 Peptidase S9, prolyl oligopeptidase (Peptidase S9, prolyl oligopeptidase active site region)	MSMEG_4339 Tetratricopeptide repeat family protein (Transcriptional regulator, LuxR family)
MSMEG_2529 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC 1.1.1.26) (Glyoxylate reductase)	MSMEG_4848 Uncharacterized protein
MSMEG_2528 Glycerate kinase (EC 2.7.1.31)	MSMEG_2911 Integral membrane transport protein (Major facilitator superfamily MFS_1)
MSMEG_1733 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.30min

Wild.type.rep3

Biological.replicate.4.of.6..kanamycin.treatment

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.7.of.7..falcarinol.treatment

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.1

mc2155.vs.Dcrp1.replicate.4

dcpA.knockout.rep2

dcpA.knockout.rep1

Sub.MIC.INH

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

X2.5..vs..50..air.saturation.Replicate.4

Biological.replicate.4.of.7..ethambutol.treatment

WT_log.phase_rep1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..negative.control

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Bedaquiline.vs..DMSO.60min

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.6.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide603norm

Biological.replicate.5.of.6..kanamycin.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

WT.vs..DamtR.N.surplus_dyeswap_rep2

Biological.replicate.1.of.6..negative.control

X2XR.rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments