Module 446 Residual: 0.53Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.53	9.4e-32	0.00000071	81	26	20160204

Motifs

Motif 1
	e-value: 9.4e-32
Motif 2
	e-value: 0.00000071

Module Plots

Members

MSMEG_4522	MSMEG_3614 Uncharacterized protein
MSMEG_1841 Rubredoxin	MSMEG_3613 Uncharacterized protein
MSMEG_1840 Rubredoxin	MSMEG_5669
MSMEG_1842 Transcriptional regulator, TetR family protein	MSMEG_3146 Invasin 1
MSMEG_5186 HicB family protein	MSMEG_3145 Peptidoglycan endopeptidase RipA (EC 3.4.-.-) (Resuscitation-promoting factor interaction partner A) (Rpf-interacting protein A)
MSMEG_5187 Major facilitator superfamily MFS_1 (Tetracycline-resistance determinant TetV)	MSMEG_3388 S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase (EC 1.1.1.1) (EC 1.1.1.284)
MSMEG_1571 Integral membrane protein	MSMEG_1839 Alkane 1-monooxygenase (EC 1.14.15.3) (Putative transmembrane alkane 1-monooxygenase Alkb) (EC 1.14.15.3)
MSMEG_0191 BadF/BadG/BcrA/BcrD ATPase family protein	MSMEG_3386 Shikimate transporter
MSMEG_0192 Transcriptional regulator, RpiR family protein	MSMEG_3387 Aldehyde dehydrogenase (NAD) family protein (EC 1.2.1.-) (NAD-dependent aldehyde dehydrogenase, AldA_1)
MSMEG_0193 N-acetylmuramic acid 6-phosphate etherase (MurNAc-6-P etherase) (EC 4.2.1.126) (N-acetylmuramic acid 6-phosphate hydrolase) (N-acetylmuramic acid 6-phosphate lyase)	MSMEG_1698 Putative ammonia monooxygenase (Putative ammonia monooxygenase superfamily protein)
MSMEG_1531 Uncharacterized protein	MSMEG_1572 Transcriptional regulator, GntR family protein
MSMEG_1530 Integral membrane protein	MSMEG_1696 Regulatory protein, MarR (Transcriptional regulator, MarR family)
MSMEG_6316 Lipoprotein LpqH (Lipoprotein lpqH)	MSMEG_6314 Haloalkane dehalogenase (Haloalkane dehalogenase 1) (EC 3.8.1.5)

Conditions

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.vs..DglnR.N_starvation_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.4.of.6..negative.control

WT.vs..DamtR.without.N_rep2

M..smegmatis.Acid.NO.treated

Mycobacterium.smegmatis.Spheroplast.induced

dosR.WT_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

MB100pruR.vs..MB100..rep.3

KO_log.phase_rep2

KO_log.phase_rep1

DglnR_without.vs..with.N_rep1

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.2.of.7..ethambutol.treatment

DglnR_without.vs..with.N_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.7..falcarinol.treatment

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.2.of.6..kanamycin.treatment

X0.6..vs..50..air.saturation.Replicate.4

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

stphcy5plogcy3slide487norm

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

dcpA.knockout.rep1

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.2.of.6..isoniazid.treatment

X2.5..vs..50..air.saturation.Replicate.4

WT.with.vs..without.N_dye.swap_rep1

stphcy3plogcy5slide581norm

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep2

WT.vs..DglnR.N_starvation_dye.swap_rep1

X4XR.rep2

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X4XR.rep1

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

Wild.type.rep1.y

WT.vs..DglnR.N_starvation_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

Comments