Module 465 Residual: 0.54
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.54 | 0.00000000039 | 4.7 | 80 | 26 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 0.00000000039 | |
| Motif 2 |
 |
| e-value: 4.7 |
| MSMEG_1914 ECF RNA polymerase sigma factor SigH (ECF sigma factor SigH) (Alternative RNA polymerase sigma factor SigH) (RNA polymerase sigma-H factor) (Sigma-H factor) | MSMEG_6765 Transport permease protein |
| MSMEG_1913 YbaK/ebsC protein | MSMEG_6766 ABC transporter related protein (ABC transporter, ATP-binding protein, NodI family protein) |
| MSMEG_3356 Uncharacterized protein | MSMEG_0524 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100) |
| MSMEG_0684 Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein (EC 1.17.1.4) (Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding) | MSMEG_0526 Glucose-methanol-choline oxidoreductase (EC 1.1.99.1) (Oxidoreductase, GMC family protein) |
| MSMEG_0685 Molybdopterin dehydrogenase, FAD-binding protein (EC 1.17.1.4) (Oxidoreductase, molybdopterin-binding subunit) | MSMEG_3519 2-nitropropane dioxygenase NPD (EC 1.13.12.16) (Oxidoreductase, 2-nitropropane dioxygenase family protein) |
| MSMEG_0686 (2Fe-2S)-binding protein (EC 1.2.99.2) (Oxidoreductase) | MSMEG_5788 Integral membrane protein |
| MSMEG_3505 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) (Amidase) (EC 3.5.1.4) | MSMEG_0081 Uncharacterized protein |
| MSMEG_1660 2-nitropropane dioxygenase, NPD (Oxidoreductase, 2-nitropropane dioxygenase family protein) | MSMEG_3504 Probable membrane protein |
| MSMEG_0701 Uncharacterized protein | MSMEG_0046 Uncharacterized protein |
| MSMEG_0700 Uncharacterized protein | MSMEG_0044 Uncharacterized protein |
| MSMEG_2026 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) | MSMEG_0045 Uncharacterized protein |
| MSMEG_5030 Uncharacterized protein | MSMEG_0043 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B |
| MSMEG_0080 Uncharacterized protein | MSMEG_3952 Uncharacterized protein |
KO_stationary.phase_rep1
KO_log.phase_rep1
Biological.replicate.4.of.6..negative.control
Biological.replicate.4.of.7..ethambutol.treatment
Wild.type.rep1.x
Biological.replicate.1.of.6..negative.control
MB100pruR.vs..MB100..rep.3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Biological.replicate.2.of.6..kanamycin.treatment
Wild.type.rep2.y
Wild.type.rep1.y
X3dbfcy5plogcy3slide601norm
DglnR_without.vs..with.N_rep1
DglnR_without.vs..with.N_rep2
Biological.replicate.3.of.7..panaxydol.treatment
WT.vs..DamtR.without.N_.dyeswap_rep2
Biological.replicate.7.of.7..ethambutol.treatment
Biological.replicate.1.of.7..ethambutol.treatment
rel.knockout.rep2
Wild.type.rep3
Bedaquiline.vs..DMSO..45min
Biological.replicate.1.of.7..falcarinol.treatment
Biological.replicate.6.of.7..falcarinol.treatment
WT.vs..DglnR.N_starvation_dye.swap_rep2
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.4.of.6..kanamycin.treatment
WT_log.phase_rep2
X0.6..vs..50..air.saturation.Replicate.3
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
Slow.vs..Fast.Replicate.2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
mc2155.vs.Dcrp1.replicate.2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
mc2155.vs.Dcrp1.replicate.1
Biological.replicate.3.of.6..negative.control
Biological.replicate.5.of.7..panaxydol.treatment
dcpA.knockout.rep1
Biological.replicate.2.of.7..falcarinol.treatment
Plogcy5plogcy3slide111norm
Biological.replicate.5.of.6..negative.control
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
X3dbfcy3plogcy5slide607norm
WT_log.phase_rep1
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
X2.5..vs..50..air.saturation.Replicate.3
WT_stationary.phase_rep2
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
Biological.replicate.4.of.6..isoniazid.treatment
Biological.replicate.5.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.4
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Bedaquiline.vs..DMSO.60min
Biological.replicate.4.of.7..falcarinol.treatment
WT.vs..DglnR.N_starvation_dye.swap_rep1
Biological.replicate.6.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.3
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
mc2155.pMind..vs.mc2155.pMind.6189.replicate.4
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_dyeswap_rep2
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
DglnR_without.vs..with.N_dyeswap_rep2
X2XR.rep1
X2XR.rep2
DglnR_without.vs..with.N_dyeswap_rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
Plogcy5plogcy3slide113norm
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
dosR.WT_Replicate2
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