Module 491 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	0.0000000000000058	0.0000018	79	34	20160204

Motifs

Motif 1
	e-value: 0.0000000000000058
Motif 2
	e-value: 0.0000018

Module Plots

Members

MSMEG_5485 Molybdopterin biosynthesis protein	MSMEG_0059 ATPase, AAA family protein
MSMEG_5486 Peptidase S1 and S6, chymotrypsin/Hap (Serine protease PepD)	MSMEG_0058 Uncharacterized protein
MSMEG_0868 Uncharacterized protein	MSMEG_3653 Uncharacterized protein
MSMEG_0869 Uncharacterized protein	MSMEG_6439 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.3) (Regulator of ribonuclease activity homolog) (RraA-like protein)
MSMEG_6394 Cutinase (Uncharacterized protein)	MSMEG_0810 Putative pyrimidine permease RutG (Uracil-xanthine permease)
MSMEG_6395 Uncharacterized protein	MSMEG_3799 Uncharacterized protein
MSMEG_4754 K+-dependent Na+/Ca+ exchanger related-protein (Na+/Ca+ antiporter, CaCA family)	MSMEG_2084 Uncharacterized protein
MSMEG_0804 Uncharacterized protein	MSMEG_4424 Endoribonuclease L-PSP
MSMEG_2083 Inositol monophosphatase (Putative histidinol-phosphate phosphatase, inositol monophosphatase family) (EC 3.1.3.15)	MSMEG_2110 Uncharacterized protein
MSMEG_5594 Ferredoxin-dependent glutamate synthase (EC 1.4.1.13)	MSMEG_6202 Secreted protein
MSMEG_5593 Pyruvate dehydrogenase (Thiamine pyrophosphate enzyme-like TPP binding protein) (EC 1.2.3.3)	MSMEG_6203 Cysteine synthase/cystathionine beta-synthase (EC 2.5.1.47) (Cysteine synthase/cystathionine beta-synthase family protein)
MSMEG_5799 Nucleoside-diphosphate-sugar epimerase	MSMEG_0062 Cell division FtsK/SpoIIIE (Ftsk/spoiiie family protein)
MSMEG_5798 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) (AIR synthase) (AIRS) (Phosphoribosyl-aminoimidazole synthetase)	MSMEG_0060 Putative conserved membrane protein (Uncharacterized protein)
MSMEG_3800 Uncharacterized protein	MSMEG_2700 Uncharacterized protein
MSMEG_1769 Uncharacterized protein (UsfY protein)	MSMEG_1131 Tryptophan-rich sensory protein
MSMEG_0057 Uncharacterized protein	MSMEG_0061 Ftsk/spoiiie family protein (Uncharacterized protein)
MSMEG_0056 Uncharacterized protein	MSMEG_1215 Serine/threonine-protein kinase PknE, putative (EC 2.7.11.1)

Conditions

Biological.replicate.2.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_rep2

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..negative.control

Wild.type.rep2.x

rel.knockout.rep2

Wild.type.rep3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

KO_log.phase_rep1

WT.vs..DamtR.N.surplus_dyeswap_rep2

Wild.type.rep1.x

DglnR_without.vs..with.N_rep1

MB100pruR.vs..MB100.rep.4

DamtR.with.vs..DamtR.without.N_.rep2

MB100pruR.vs..MB100.rep.2

DglnR_without.vs..with.N_rep2

mc2155.vs.Dcrp1.replicate.3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.3.of.7..falcarinol.treatment

rel.knockout.rep1

WT.vs..DamtR.N.surplus_.dyeswap_rep1

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

stphcy5plogcy3slide487norm

Wild.type.rep2.y

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

X2.5..vs..50..air.saturation.Replicate.4

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

stphcy3plogcy5slide581norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Biological.replicate.2.of.6..negative.control

WT_stationary.phase_rep1

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Bedaquiline.vs..DMSO.60min

Biological.replicate.2.of.6..kanamycin.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

X4dbfcy5plogcy3slide480norm

Biological.replicate.5.of.6..kanamycin.treatment

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DglnR.N_starvation_rep1

WT.vs..DglnR.N_starvation_rep2

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

Wild.type.rep1.y

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Biological.replicate.4.of.6..kanamycin.treatment

BatchCulture_LBTbroth_StationaryPhase_Replicate3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

dosR.WT_Replicate2

Comments