Module 492 Residual: 0.47Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.47	0.00000000000053	0.0000000000044	88	19	20160204

Motifs

Motif 1
	e-value: 0.00000000000053
Motif 2
	e-value: 0.0000000000044

Module Plots

Members

MSMEG_5697 Conserved integral membrane protein (Integral membrane protein)	MSMEG_1682 Flavin-containing monooxygenase FMO
MSMEG_0660 Bacterial extracellular solute-binding protein	MSMEG_1681 Endoribonuclease L-PSP superfamily protein
MSMEG_6174 Transcriptional regulator, IclR family (Transcriptional regulator, IclR family protein)	MSMEG_0780 Phosphotransferase enzyme family protein
MSMEG_6175 2-keto-3-deoxy-galactonokinase (2-keto-3-deoxy-galactonokinase (2-dehydro-3-deoxygalactonokinase)) (EC 2.7.1.58)	MSMEG_6178 D-galactonate transporter (Major facilitator superfamily MFS_1)
MSMEG_6176 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.21) (KDPG and KHG aldolase)	MSMEG_0659 Polyamine ABC transporter permease (Polyamine ABC transporter permease protein)
MSMEG_6177 Galactonate dehydratase (EC 4.2.1.6) (Mandelate racemase/muconate lactonizing protein (Galactonate dehydratase))	MSMEG_0658 Polyamine ABC-transporter, inner membrane subunit
MSMEG_1679 AmiB (Amidohydrolase AmiB1)	MSMEG_0662 Polyamine-transporting ATPase (EC 3.6.3.31)
MSMEG_5696 'Cold-shock' DNA-binding domain protein	MSMEG_0782 Aminotransferase class III (EC 2.6.1.-) (Aminotransferase class-III)
MSMEG_0661 Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)	MSMEG_1677 Aspartate ammonia-lyase (EC 4.3.1.1)
MSMEG_0781 Amino acid permease (Amino acid permease-associated region)

Conditions

KO_stationary.phase_rep2

Biological.replicate.4.of.7..ethambutol.treatment

Wild.type.rep2.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_.rep2

WT.vs..DamtR.N.surplus_rep2

stphcy5plogcy3slide487norm

X3dbfcy5plogcy3slide601norm

Biological.replicate.2.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.6.of.7..ethambutol.treatment

X4dbfcy5plogcy3slide901norm

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.without.N_rep1

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.6..negative.control

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

WT_log.phase_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

WT.with.vs..without.N_dye.swap_rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.vs..DglnR.N_starvation_rep1

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

Sub.MIC.INH

Mycobacterium.smegmatis.Spheroplast.induced

MB100pruR.vs..MB100..rep.3

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

DglnR_without.vs..with.N_rep1

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.6.of.7..falcarinol.treatment

M..smegmatis.Acid.NO.treated

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.2.of.6..isoniazid.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Wild.type.rep1.y

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Wild.type.rep3

Biological.replicate.4.of.6..isoniazid.treatment

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.4

dcpA.knockout.rep2

dcpA.knockout.rep1

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.2

X4XR.rep2

X4XR.rep1

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.5.of.6..isoniazid.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide603norm

WT.vs..DamtR.N.surplus_dyeswap_rep2

Biological.replicate.5.of.7..falcarinol.treatment

Biological.replicate.1.of.6..negative.control

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Comments