Module 498 Residual: 0.52Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.52	1.8e-16	0.000000000035	79	30	20160204

Motifs

Motif 1
	e-value: 1.8e-16
Motif 2
	e-value: 0.000000000035

Module Plots

Members

MSMEG_3706 Isocitrate lyase (EC 4.1.3.1) (Putative isocitrate lyase aceab second part (Isocitrase) (Isocitratase))	MSMEG_0876 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR)
MSMEG_4239 LppM protein	MSMEG_2099 ABC transporter, periplasmic substrate-binding protein (ABC transporter, substrate binding protein [nitrate/sulfonate], putative)
MSMEG_1930 DEAD/DEAH box helicase	MSMEG_3539 Uncharacterized protein
MSMEG_4291 D-aminoacyl-tRNA deacylase (EC 3.1.1.96) (D-tyrosyl-tRNA(Tyr) deacylase)	MSMEG_0878 Transcriptional regulator
MSMEG_3543 Soluble secreted antigen MPT53	MSMEG_6431 Uncharacterized protein
MSMEG_3541 Conserved integral membrane protein (Cytochrome C biogenesis protein transmembrane region)	MSMEG_4518 Alpha-helical coiled-coil protein (Uncharacterized protein)
MSMEG_6797 Carboxymuconolactone decarboxylase	MSMEG_4519 Conserved hypothetical membrane protein (NrtC protein)
MSMEG_0158 Formyl-CoA:oxalate CoA-transferase (FCOCT) (EC 2.8.3.16) (Formyl-coenzyme A transferase)	MSMEG_1379 Uncharacterized protein
MSMEG_1320 Major facilitator superfamily protein MFS_1	MSMEG_6181 Uncharacterized protein
MSMEG_5319 Alkyl hydroperoxide reductase AhpD (EC 1.11.1.15)	MSMEG_6180 Secreted protein
MSMEG_2412 Pyruvate carboxylase (EC 6.4.1.1)	MSMEG_6182 Conserved transmembrane protein (Uncharacterized protein)
MSMEG_5299 Uncharacterized protein	MSMEG_6184 Epoxide hydrolase EphE (EC 3.3.2.-) (Hydrolase, alpha/beta fold family protein)
MSMEG_3612 Probable conserved integral membrane protein	MSMEG_1321 5-carboxymethyl-2-hydroxymuconate delta-isomerase
MSMEG_3921 Uncharacterized protein	MSMEG_1319 Asp/Glu racemase
MSMEG_3923 Uncharacterized protein	MSMEG_1272 ADP-ribosylation/Crystallin J1 (Putative ribosylglycohydrolase)

Conditions

Bedaquiline.vs..DMSO.30min

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.6..negative.control

Plogcy5plogcy3slide110norm

Biological.replicate.3.of.7..falcarinol.treatment

Wild.type.rep3

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate3

dosR.WT_Replicate1

Wild.type.rep2.y

DglnR_without.vs..with.N_rep1

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.5.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep1

DamtR.with.vs..DamtR.without.N_.rep2

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

Sub.MIC.INH

X0.6..vs..50..air.saturation.Replicate.5

Biological.replicate.6.of.7..ethambutol.treatment

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

dosR.WT_Replicate4

stphcy5plogcy3slide487norm

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

dcpA.knockout.rep1

Biological.replicate.2.of.6..isoniazid.treatment

X2.5..vs..50..air.saturation.Replicate.4

Biological.replicate.2.of.7..ethambutol.treatment

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.2.of.6..negative.control

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.2

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.5.of.6..negative.control

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DglnR.N_starvation_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments