Module 514 Residual: 0.52
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.52 | 0.00000000021 | 0.0000034 | 85 | 15 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 0.00000000021 | |
| Motif 2 |
 |
| e-value: 0.0000034 |
| MSMEG_0639 ABC transporter ATP-binding protein (Oligopeptide transport ATP-binding protein AppF) | MSMEG_3604 Short-chain dehydrogenase/reductase SDR (EC 1.1.1.-) (Sorbitol utilization protein SOU2) (EC 1.1.-.-) |
| MSMEG_0643 ABC transporter solute-binding protein (Extracellular solute-binding protein, family protein 5, putative) | MSMEG_0642 Binding-protein-dependent transport systems inner membrane component (Hypothetical ABC transporter permease protein YliD) |
| MSMEG_0644 Cupin domain protein | MSMEG_3606 DeoR (Transcriptional regulator) (EC 2.7.1.29) (Transcriptional regulator) |
| MSMEG_6642 Caib/baif family protein (L-carnitine dehydratase/bile acid-inducible protein F) (EC 2.8.3.16) | MSMEG_3601 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components (Sugar transport system permease protein) (EC 3.6.3.17) |
| MSMEG_0640 Oligopeptide transport ATP-binding protein OppD (Oligopeptide/dipeptide ABC transporter, ATPase subunit) (EC 3.6.3.27) | MSMEG_3607 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.125) |
| MSMEG_6641 Nitrilotriacetate monooxygenase component A (EC 1.14.13.-) (Xenobiotic compound monooxygenase, DszA family, A subunit) | MSMEG_3603 Alcohol dehydrogenase GroES-like protein (EC 1.1.1.-) (Oxidoreductase, zinc-binding dehydrogenase family protein) |
| MSMEG_0641 Binding-protein-dependent transport systems inner membrane component | MSMEG_3602 Putative D-ribose ABC transporter ATP-binding protein (Ribose transport ATP-binding protein RbsA) (EC 3.6.3.17) |
| MSMEG_3605 Sorbitol dehydrogenase (EC 1.1.1.14) |
KO_stationary.phase_rep1
KO_stationary.phase_rep2
WT.vs..DglnR.N_starvation_rep2
WT.vs..DamtR.without.N_rep1
Biological.replicate.3.of.6..kanamycin.treatment
dcpA.knockout.rep2
M..smegmatis.Acid.NO.treated
Biological.replicate.4.of.6..negative.control
Biological.replicate.2.of.6..isoniazid.treatment
Bedaquiline.vs..DMSO.30min
Biological.replicate.3.of.7..ethambutol.treatment
dosR.WT_Replicate2
dosR.WT_Replicate1
KO_log.phase_rep2
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
dosR.WT_Replicate4
Biological.replicate.7.of.7..falcarinol.treatment
DglnR_without.vs..with.N_rep2
Biological.replicate.6.of.6..negative.control
WT.vs..DamtR.without.N_.dyeswap_rep1
Biological.replicate.1.of.6..kanamycin.treatment
Bedaquiline.vs..DMSO.60min
WT.with.vs..without.N_dye.swap_rep1
Biological.replicate.3.of.7..falcarinol.treatment
Bedaquiline.vs..DMSO..45min
Biological.replicate.1.of.7..falcarinol.treatment
Biological.replicate.6.of.7..falcarinol.treatment
WT.vs..DamtR.without.N_rep2
DamtR.with.vs..DamtR.without.N_.rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
Biological.replicate.3.of.6..isoniazid.treatment
DamtR.with.vs..DamtR.without.N_.rep2
WT_log.phase_rep2
Sub.MIC.INH
X0.6..vs..50..air.saturation.Replicate.5
X0.6..vs..50..air.saturation.Replicate.4
Biological.replicate.2.of.7..falcarinol.treatment
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
mc2155.vs.Dcrp1.replicate.2
Plogcy5plogcy3slide113norm
Biological.replicate.2.of.7..ethambutol.treatment
mc2155.vs.Dcrp1.replicate.4
Biological.replicate.3.of.6..negative.control
X4dbfcy5plogcy3slide901norm
Biological.replicate.5.of.7..panaxydol.treatment
dcpA.knockout.rep1
X4dbfcy5plogcy3slide480norm
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
stphcy3plogcy5slide581norm
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
X2.5..vs..50..air.saturation.Replicate.3
Biological.replicate.2.of.6..negative.control
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.1.of.7..ethambutol.treatment
X4XR.rep2
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
mc2155.vs.Dcrp1.replicate.3
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_dye.swap_rep2
Biological.replicate.4.of.7..falcarinol.treatment
WT.vs..DglnR.N_starvation_dye.swap_rep1
WT.vs..DglnR.N_starvation_dye.swap_rep2
Biological.replicate.7.of.7..panaxydol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
X3dbfcy5plogcy3slide603norm
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_dyeswap_rep2
WT.with.vs..without.N_rep2
WT.with.vs..without.N_rep1
Biological.replicate.1.of.6..negative.control
X2XR.rep2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
WT.vs..DglnR.N_starvation_rep1
BatchCulture_LBTbroth_StationaryPhase_Replicate4
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
Bedaquiline.vs..DMSO.120min
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