Module 516 Residual: 0.53Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.53	3.8e-20	0.000000013	77	28	20160204

Motifs

Motif 1
	e-value: 3.8e-20
Motif 2
	e-value: 0.000000013

Module Plots

Members

MSMEG_3358 YaeQ family protein (YaeQ protein)	MSMEG_4365 Uncharacterized protein
MSMEG_5759 PE-PPE, C-terminal domain protein (Pe family protein)	MSMEG_5131 Uncharacterized protein
MSMEG_6735 Amino acid permease, putative (Amino acid permease-associated region)	MSMEG_5761 Cupin domain protein
MSMEG_3677 Serine/threonine protein kinase (Serine/threonine-protein kinase pknF) (EC 2.7.11.1)	MSMEG_5762 Alcohol dehydrogenase, zinc-binding protein (Zinc-binding oxidoreductase)
MSMEG_0828 Immunogenic protein MPT63	MSMEG_5763 Uncharacterized protein
MSMEG_5708 Uncharacterized protein	MSMEG_5764 Putative cyanamide hydratase (Urea hydro-lyase/cyanamide hydratase, putative) (EC 4.2.1.69)
MSMEG_4056 Conserved secreted protein (NAD-dependent epimerase/dehydratase:dTDP-4-dehydrorhamnose reductase:NmrA-like protein)	MSMEG_3678 Uncharacterized protein
MSMEG_6376 LacI family regulatory protein (EC 5.1.1.1) (Transcriptional regulator LacI family protein)	MSMEG_1586 Beta-lactamase
MSMEG_6377 Uncharacterized protein	MSMEG_1838 Cationic amino acid transporter
MSMEG_1666 Alternative RNA polymerase sigma factor SigJ (RNA polymerase sigma-70 factor)	MSMEG_3456 Hydroxylaminobenzene mutase
MSMEG_0559 Cold shock protein A cspA (Conserved domain protein)	MSMEG_2322
MSMEG_6378 Senescence marker protein-30 (Senescence marker protein-30 (SMP-30))	MSMEG_4066 Uncharacterized protein
MSMEG_2146 Gp15 protein (Gp22)	MSMEG_5844 Uncharacterized protein
MSMEG_4363 Uncharacterized protein	MSMEG_4068 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Wild.type.rep2.y

Biological.replicate.4.of.6..negative.control

Wild.type.rep2.x

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate3

dosR.WT_Replicate1

KO_log.phase_rep1

dosR.WT_Replicate4

Wild.type.rep1.y

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.6..kanamycin.treatment

Wild.type.rep3

Biological.replicate.1.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

Sub.MIC.INH

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.2.of.7..ethambutol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

X3dbfcy5plogcy3slide601norm

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT.with.vs..without.N_dye.swap_rep1

Biological.replicate.5.of.6..isoniazid.treatment

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.2.of.6..kanamycin.treatment

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X4XR.rep1

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

X2XR.rep1

X2XR.rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Biological.replicate.2.of.6..negative.control

Biological.replicate.4.of.6..isoniazid.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.5.of.6..kanamycin.treatment

Comments