Module 538 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	21	0	75	34	20160204

Motifs

Motif 1
	e-value: 21
Motif 2
	e-value: 0

Module Plots

Members

MSMEG_3528 ErfK/YbiS/YcfS/YnhG family protein	MSMEG_1322 ErfK/YbiS/YcfS/YnhG family protein
MSMEG_6485 ATP binding protein (Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein)	MSMEG_4625 50S ribosomal protein L21
MSMEG_4627 Nucleoside diphosphate kinase (NDK) (NDP kinase) (EC 2.7.4.6) (Nucleoside-2-P kinase)	MSMEG_4108 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Nicotinamide nucleotide transhydrogenase subunit beta)
MSMEG_4624 50S ribosomal protein L27	MSMEG_3273 Glutamyl aminopeptidase, M42 family protein
MSMEG_5204 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short-chain dehydrogenase/reductase SDR)	MSMEG_4963 Condensation domain protein (Peptide synthetase ScpsB, putative)
MSMEG_6488 Uncharacterized protein	MSMEG_4575 Uncharacterized protein
MSMEG_1956 Uncharacterized protein	MSMEG_5981 Glycosyl transferase, putative
MSMEG_3377 Uncharacterized protein	MSMEG_1633 DNA polymerase III, alpha subunit, putative
MSMEG_5716 Uncharacterized protein	MSMEG_4961 Uncharacterized protein
MSMEG_5401 Uncharacterized protein	MSMEG_2243 Isochorismatase family protein
MSMEG_6540 MCE-family protein MCE1a (Virulence factor Mce family protein)	MSMEG_5788 Integral membrane protein
MSMEG_6274 Uncharacterized protein	MSMEG_0893 Uncharacterized protein
MSMEG_0474 Glutamine--fructose-6-phosphate aminotransferase [isomerizing]	MSMEG_0632 Uncharacterized protein
MSMEG_1247 Uncharacterized protein	MSMEG_3186 Glycogen operon protein GlgX homolog (EC 3.2.1.-)
MSMEG_0520 Porin MspB	MSMEG_3184 Malto-oligosyltrehalose trehalohydrolase (MTHase) (EC 3.2.1.141) (4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase) (Maltooligosyl trehalose trehalohydrolase)
MSMEG_5206 Regulatory protein (Transcriptional regulator, TetR family)	MSMEG_0485 Amidase (EC 3.5.1.4)
MSMEG_6496 ABC transporter related protein (EC 3.6.3.36) (Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit)	MSMEG_5128 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_rep2

Biological.replicate.3.of.7..ethambutol.treatment

Mycobacterium.smegmatis.Spheroplast.induced

Plogcy5plogcy3slide110norm

Biological.replicate.4.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.30min

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate3

dosR.WT_Replicate1

stphcy5plogcy3slide487norm

KO_log.phase_rep1

Biological.replicate.7.of.7..falcarinol.treatment

Wild.type.rep1.y

DglnR_without.vs..with.N_rep2

Biological.replicate.6.of.6..negative.control

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.7..ethambutol.treatment

rel.knockout.rep2

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.5

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

Plogcy5plogcy3slide113norm

Wild.type.rep2.y

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

stphcy3plogcy5slide581norm

Biological.replicate.4.of.7..panaxydol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

X2.5..vs..50..air.saturation.Replicate.2

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.2.of.6..kanamycin.treatment

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Wild.type.rep2.x

Biological.replicate.4.of.7..falcarinol.treatment

mc2155.vs.Dcrp1.replicate.1

Slow.vs..Fast.Replicate.3

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

Wild.type.rep3

X4dbfcy5plogcy3slide901norm

dosR.WT_Replicate4

X2XR.rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.2.of.6..negative.control

Biological.replicate.4.of.6..isoniazid.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.6.of.7..panaxydol.treatment

Comments