Module 548 Residual: 0.53Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.53	0.000069	8.2	74	29	20160204

Motifs

Motif 1
	e-value: 0.000069
Motif 2
	e-value: 8.2

Module Plots

Members

MSMEG_0842 Uncharacterized protein	MSMEG_3325 Uncharacterized protein
MSMEG_6135 Uncharacterized protein	MSMEG_6874 Aldehyde Dehydrogenase (Aldehyde dehydrogenase)
MSMEG_1289 Transcriptional regulator, XRE family (Uncharacterized protein)	MSMEG_6382 FAD-dependent decaprenylphosphoryl-beta-D-ribofuranose 2-oxidase (EC 1.1.98.3) (Decaprenylphospho-beta-D-ribofuranose 2-dehydrogenase) (Decaprenylphosphoryl-beta-D-ribofuranose 2'-epimerase 1) (DprE1)
MSMEG_5958 Uncharacterized protein	MSMEG_6381 Uncharacterized protein
MSMEG_0726 Uncharacterized protein	MSMEG_6740 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7)
MSMEG_5265 Cystathionine gamma-synthase (Putative cystathionine gamma-synthase) (EC 2.5.1.48)	MSMEG_0818 General substrate transporter (Transporter, major facilitator family protein)
MSMEG_6010 Uncharacterized protein	MSMEG_2340 Uncharacterized protein
MSMEG_6344 Transcriptional regulator	MSMEG_2201 MaoC-like dehydratase (EC 4.2.1.17) (ZbpA protein)
MSMEG_6235 Thiopurine S-methyltransferase (Tpmt) superfamily protein	MSMEG_6794 DNA-binding protein
MSMEG_5695 Glutathione S-transferase	MSMEG_4597 Putative conserved lipoprotein LppH (EC 2.7.11.1) (Putative conserved lipoprotein lpph)
MSMEG_3594 Anthranilate dioxygenase reductase (Ferredoxin reductase)	MSMEG_3357 Metal-dependent phosphohydrolase, HD subdomain (Metal-dependent phosphohydrolase, HD subdomain protein)
MSMEG_2639 Integral membrane protein	MSMEG_0043 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
MSMEG_2591 Uncharacterized protein	MSMEG_2851 Uncharacterized protein
MSMEG_1790 Uncharacterized protein	MSMEG_4094 Acyl-CoA dehydrogenase (Putative Acyl-CoA dehydrogenase) (EC 1.3.8.4)
MSMEG_6165 Uncharacterized protein

Conditions

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.4.of.6..negative.control

Bedaquiline.vs..DMSO.15min

Mycobacterium.smegmatis.Spheroplast.induced

Plogcy5plogcy3slide110norm

Bedaquiline.vs..DMSO.30min

Plogcy5plogcy3slide113norm

dosR.WT_Replicate1

KO_log.phase_rep2

KO_log.phase_rep1

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO..45min

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

Biological.replicate.5.of.6..kanamycin.treatment

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.2.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.2.of.7..falcarinol.treatment

stphcy5plogcy3slide580norm

Biological.replicate.3.of.6..kanamycin.treatment

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

X2.5..vs..50..air.saturation.Replicate.3

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.N.surplus_dyeswap_rep2

X2XR.rep1

X2XR.rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.6.of.7..panaxydol.treatment

Comments