Module 586 Residual: 0.56
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.56 | 4e-21 | 0.000000000000015 | 77 | 24 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 4e-21 | |
| Motif 2 |
 |
| e-value: 0.000000000000015 |
| MSMEG_5739 Putative long-chain fatty-acid--CoA ligase | MSMEG_2169 Acetyl-CoA carboxylase, carboxyl transferase, beta subunit (EC 6.4.1.2) |
| MSMEG_6487 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2, 4-dienoate decarboxylase (Aminocarboxymuconate-semialdehyde decarboxylase) (EC 4.1.1.45) | MSMEG_2800 NADPH-dependent FMN reductase (NADPH-dependent fmn reductase) |
| MSMEG_5737 Uncharacterized protein | MSMEG_2801 Uncharacterized protein |
| MSMEG_2171 L-carnitine dehydratase/bile acid-inducible protein F | MSMEG_0366 Uncharacterized protein |
| MSMEG_1625 Amino acid permease-associated (Amino acid transporter, putative) | MSMEG_2226 Uncharacterized protein |
| MSMEG_1624 Universal stress protein family protein (UspA domain protein) | MSMEG_2227 Carnitinyl-CoA dehydratase (EC 4.2.1.-) (Enoyl-CoA hydratase EchA1) (EC 4.2.1.17) |
| MSMEG_1623 Multi-functional enzyme with acyl-CoA-reductase activity AcrA1 (EC 1.2.1.42) (Short chain dehydrogenase) | MSMEG_2228 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short-chain dehydrogenase/reductase SDR) |
| MSMEG_4851 Caib/baif family protein (L-carnitine dehydratase/bile acid-inducible protein F) (EC 2.8.3.16) | MSMEG_2541 Ribosome-recycling factor (RRF) (Ribosome-releasing factor) |
| MSMEG_4853 Peptidase M24 (EC 3.5.3.3) (Peptidase, M24 family protein) (EC 3.4.-.-) | MSMEG_2540 Uridylate kinase (UK) (EC 2.7.4.22) (Uridine monophosphate kinase) (UMP kinase) (UMPK) |
| MSMEG_4852 Enoyl-CoA hydratase, putative (Enoyl-CoA hydratase/isomerase) | MSMEG_2543 Phosphatidate cytidylyltransferase (EC 2.7.7.41) |
| MSMEG_4855 Amidohydrolase 2 (Amidohydrolase family protein) | MSMEG_2405 MarR-family protein transcriptional regulator |
| MSMEG_4854 Peptidase M24 (Peptidase, M24 family protein) (EC 3.4.-.-) | MSMEG_2406 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein, putative) |
Bedaquiline.vs..DMSO.30min
Biological.replicate.5.of.7..falcarinol.treatment
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.4.of.6..negative.control
WT.vs..DamtR.without.N_rep2
M..smegmatis.Acid.NO.treated
Mycobacterium.smegmatis.Spheroplast.induced
Wild.type.rep2.x
Biological.replicate.4.of.7..ethambutol.treatment
Biological.replicate.1.of.6..negative.control
dosR.WT_Replicate2
dosR.WT_Replicate1
KO_log.phase_rep2
KO_log.phase_rep1
Plogcy5plogcy3slide110norm
Wild.type.rep1.y
MB100pruR.vs..MB100.rep.2
WT.vs..DamtR.without.N_.dyeswap_rep1
WT.vs..DamtR.without.N_.dyeswap_rep2
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.5.of.7..panaxydol.treatment
Biological.replicate.1.of.7..ethambutol.treatment
WT.with.vs..without.N_dye.swap_rep1
Biological.replicate.3.of.7..falcarinol.treatment
Wild.type.rep3
Bedaquiline.vs..DMSO..45min
Biological.replicate.6.of.6..negative.control
Biological.replicate.6.of.7..falcarinol.treatment
Biological.replicate.7.of.7..falcarinol.treatment
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
Biological.replicate.3.of.6..isoniazid.treatment
WT.vs..DglnR.N_starvation_dye.swap_rep1
Sub.MIC.INH
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
WT.vs..DglnR.N_starvation_dye.swap_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2
mc2155.vs.Dcrp1.replicate.2
Biological.replicate.2.of.7..ethambutol.treatment
WT.vs..DamtR.N.surplus_rep2
dcpA.knockout.rep2
dcpA.knockout.rep1
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
stphcy3plogcy5slide581norm
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.1
WT.with.vs..without.N_dye.swap_rep2
Biological.replicate.2.of.6..kanamycin.treatment
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
X4XR.rep2
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Biological.replicate.4.of.7..falcarinol.treatment
Slow.vs..Fast.Replicate.1
Slow.vs..Fast.Replicate.2
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
Biological.replicate.1.of.7..falcarinol.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_dyeswap_rep2
WT.with.vs..without.N_rep2
Biological.replicate.3.of.7..ethambutol.treatment
WT.with.vs..without.N_rep1
DglnR_without.vs..with.N_dyeswap_rep2
X2XR.rep1
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
WT.vs..DglnR.N_starvation_rep1
BatchCulture_LBTbroth_StationaryPhase_Replicate4
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
Biological.replicate.2.of.6..negative.control
Biological.replicate.4.of.6..isoniazid.treatment
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
Biological.replicate.3.of.6..negative.control
Biological.replicate.6.of.7..panaxydol.treatment
Bedaquiline.vs..DMSO.120min
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