Module 594 Residual: 0.58
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.58 | 0.000000000000041 | 0.000076 | 78 | 24 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 0.000000000000041 | |
| Motif 2 |
 |
| e-value: 0.000076 |
| MSMEG_1912 Muconolactone Delta-isomerase (MIase) (EC 5.3.3.4) | MSMEG_1906 Short-chain dehydrogenase/reductase SDR (EC 1.3.1.25) (Toluate 1,2-dioxygenase electron transfer component) (EC 1.18.1.3) |
| MSMEG_1911 Catechol 1,2-dioxygenase (EC 1.13.11.1) (Chlorocatechol 1,2-dioxygenase) (EC 1.13.11.1) | MSMEG_1907 2-chlorobenzoate 1,2-dioxygenase (EC 1.14.12.-) (Toluate 1,2-dioxygenase beta subunit) |
| MSMEG_1910 Mandelate racemase/muconate lactonizing protein (EC 5.5.1.1) (Muconate cycloisomerase) | MSMEG_1908 Benzoate 1,2-dioxygenase alpha subunit (Rieske (2Fe-2S) domain protein (Benzoate 1,2-dioxygenase alpha subunit)) (EC 1.14.12.10) |
| MSMEG_6718 Major facilitator superfamily (MFS_1) transporter (Transporter, major facilitator family protein) | MSMEG_1909 LysR-type transcriptional regulator (Putative HTH-type transcriptional regulator YnfL) |
| MSMEG_5269 Uncharacterized protein | MSMEG_3559 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) |
| MSMEG_0291 Dioxygenase, TauD/TfdA family protein (Taurine catabolism dioxygenase TauD/TfdA) | MSMEG_3558 Carboxymethylenebutenolidase (Putative dienelactone hydrolase (Carboxymethylenebutenolidase)) (EC 3.1.1.45) |
| MSMEG_5346 TetR-family protein transcriptional regulator | MSMEG_3343 Uncharacterized protein |
| MSMEG_5347 Major facilitator superfamily MFS_1 (Transporter, major facilitator family protein) | MSMEG_1391 Transcriptional regulator, LysR family protein |
| MSMEG_4138 Aliphatic nitrilase (EC 3.5.5.7) | MSMEG_1392 Alcohol dehydrogenase, class IV (Iron-containing alcohol dehydrogenase) (EC 1.1.1.1) |
| MSMEG_2530 4-carboxymuconolactone decarboxylase domain protein (EC 4.1.1.44) | MSMEG_0990 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) (5'-methylthioadenosine phosphorylase) (MTA phosphorylase) (MTAP) |
| MSMEG_0989 Uncharacterized protein | MSMEG_0991 NAD-dependent epimerase/dehydratase (UDP-glucose 4-epimerase galE3) (EC 5.1.3.2) |
| MSMEG_0988 1,4-dihydroxy-2-naphthoate octaprenyltransferase (DHNA-octaprenyltransferase) (EC 2.5.1.74) | MSMEG_4197 Uncharacterized protein |
KO_stationary.phase_rep1
WT.vs..DamtR.without.N_rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.3.of.6..kanamycin.treatment
Biological.replicate.4.of.6..negative.control
X3dbfcy5plogcy3slide603norm
Biological.replicate.4.of.7..ethambutol.treatment
MB100pruR.vs..MB100..rep.3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Biological.replicate.2.of.6..kanamycin.treatment
Wild.type.rep2.y
Plogcy5plogcy3slide110norm
DglnR_without.vs..with.N_rep1
Biological.replicate.3.of.7..panaxydol.treatment
Biological.replicate.6.of.6..negative.control
WT.vs..DamtR.without.N_.dyeswap_rep2
Biological.replicate.1.of.6..kanamycin.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
X4XR.rep1
Biological.replicate.1.of.7..falcarinol.treatment
Biological.replicate.3.of.7..falcarinol.treatment
DamtR.with.vs..DamtR.without.N_.rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
Biological.replicate.3.of.6..isoniazid.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
X0.6..vs..50..air.saturation.Replicate.4
Biological.replicate.2.of.7..falcarinol.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2
stphcy5plogcy3slide487norm
mc2155.vs.Dcrp1.replicate.1
Biological.replicate.1.of.7..panaxydol.treatment
mc2155.vs.Dcrp1.replicate.4
Biological.replicate.3.of.6..negative.control
mc2155.pMind..vs.mc2155.pMind.6189.replicate.4
dcpA.knockout.rep1
Plogcy5plogcy3slide111norm
X3dbfcy5plogcy3slide601norm
X2.5..vs..50..air.saturation.Replicate.5
stphcy3plogcy5slide581norm
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.1
Biological.replicate.2.of.7..ethambutol.treatment
Biological.replicate.2.of.7..panaxydol.treatment
WT_stationary.phase_rep2
WT_stationary.phase_rep1
X4XR.rep2
Biological.replicate.5.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.4
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Bedaquiline.vs..DMSO.60min
Biological.replicate.5.of.6..isoniazid.treatment
Slow.vs..Fast.Replicate.1
Slow.vs..Fast.Replicate.2
Biological.replicate.7.of.7..panaxydol.treatment
dosR.WT_Replicate3
X4dbfcy5plogcy3slide480norm
Biological.replicate.5.of.6..kanamycin.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
X4dbfcy5plogcy3slide901norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
WT.with.vs..without.N_rep2
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.vs..DglnR.N_starvation_rep2
X2XR.rep2
DglnR_without.vs..with.N_dyeswap_rep1
WT.vs..DglnR.N_starvation_dye.swap_rep2
WT.vs..DglnR.N_starvation_rep1
BatchCulture_LBTbroth_StationaryPhase_Replicate4
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
Biological.replicate.4.of.6..kanamycin.treatment
X4dbfcy3plogcy5slide903norm
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