Module 641 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	0.000000024	0.0000000044	76	36	20160204

Motifs

Motif 1
	e-value: 0.000000024
Motif 2
	e-value: 0.0000000044

Module Plots

Members

MSMEG_5481 SAF domain protein (Uncharacterized protein)	MSMEG_6896 Single-stranded DNA-binding protein (SSB)
MSMEG_6171 Uncharacterized protein	MSMEG_6895 30S ribosomal protein S18 2
MSMEG_3283 Membrane transport protein	MSMEG_6894 50S ribosomal protein L9
MSMEG_6934 Thioredoxin	MSMEG_5475 Acetate operon repressor (IclR family transcriptional regulator)
MSMEG_2521 Amidase (Putative amidase amiC) (EC 3.5.1.4)	MSMEG_6169 Type II secretion system protein E (Type II/IV secretion system protein)
MSMEG_3370 Uncharacterized protein	MSMEG_5560 Uncharacterized protein
MSMEG_4700 ABC-transporter protein, ATP binding component (ATPase component of ABC transporter)	MSMEG_6788 Dihydroxyacetone kinase (Putative dihydroxyacetone (Glycerone) kinase protein) (EC 2.7.1.29)
MSMEG_3565 Uncharacterized protein	MSMEG_5581 Conserved hypothetical integral membrane protein
MSMEG_5436 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (EC 2.7.1.148) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase)	MSMEG_5582 Uncharacterized protein
MSMEG_5266 RDD family protein	MSMEG_0340 Enoyl-CoA hydratase/isomerase family protein
MSMEG_3096 Uncharacterized protein	MSMEG_6246 Probable hercynylcysteine sulfoxide lyase (EC 4.4.-.-)
MSMEG_2755 Conserved transmembrane alanine and leucine rich protein (Uncharacterized protein)	MSMEG_3182 Uncharacterized protein
MSMEG_3464 Alcohol dehydrogenase (Alcohol dehydrogenase (ADH-HT) oxidoreductase-like protein) (EC 1.1.1.1)	MSMEG_6308 Uncharacterized protein
MSMEG_1088 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit-like amidase (EC 3.5.1.4) (Glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, A subunit) (EC 6.3.5.-)	MSMEG_1527 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I)
MSMEG_1201 Uncharacterized protein	MSMEG_1524 DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha) (EC 2.7.7.6) (RNA polymerase subunit alpha) (Transcriptase subunit alpha)
MSMEG_0256 Uncharacterized protein	MSMEG_1525 50S ribosomal protein L17
MSMEG_3863 Pyridoxamine 5'-phosphate oxidase family protein (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein)	MSMEG_3839 DNA polymerase I (EC 2.7.7.7)
MSMEG_0276 Aldehyde-alcohol dehydrogenase (EC 1.1.1.1) (EC 1.2.1.10)	MSMEG_5289 Uncharacterized protein

Conditions

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..negative.control

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate2

KO_log.phase_rep2

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Bedaquiline.vs..DMSO..45min

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

stphcy5plogcy3slide487norm

Wild.type.rep2.y

mc2155.vs.Dcrp1.replicate.1

stphcy3plogcy5slide581norm

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

WT.vs..DamtR.N.surplus_rep1

Plogcy5plogcy3slide111norm

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.2.of.7..ethambutol.treatment

X4XR.rep1

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.5.of.6..negative.control

X4dbfcy5plogcy3slide480norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.N.surplus_dyeswap_rep2

X2XR.rep1

X2XR.rep2

Biological.replicate.2.of.6..negative.control

Biological.replicate.4.of.6..isoniazid.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

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