Module 654 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	5e-26	0.000000000000031	82	30	20160204

Motifs

Motif 1
	e-value: 5e-26
Motif 2
	e-value: 0.000000000000031

Module Plots

Members

MSMEG_6449 Uncharacterized protein	MSMEG_2395 D-alanine--D-alanine ligase (EC 6.3.2.4) (D-Ala-D-Ala ligase) (D-alanylalanine synthetase)
MSMEG_1939 6-O-methylguanine DNA methyltransferase, DNA binding domain subfamily protein (EC 2.1.1.63) (Putative DNA-methyltransferase (Modification methylase))	MSMEG_6729 DNA-binding protein (Transcriptional regulator, XRE family)
MSMEG_1952 DNA helicase (EC 3.6.4.12)	MSMEG_0794 Uncharacterized protein
MSMEG_0963 Uncharacterized protein	MSMEG_0795 ABC transporter ATP-binding protein
MSMEG_3842 Esterase (Putative esterase)	MSMEG_6450 Uncharacterized protein
MSMEG_0370 Uncharacterized protein	MSMEG_0367 O-demethylpuromycin-O-methyltransferase (EC 2.1.1.38)
MSMEG_1288 Uncharacterized protein	MSMEG_3380 Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding)
MSMEG_4294 Probable glutamine synthetase 2 (EC 6.3.1.2) (Glutamate--ammonia ligase 2)	MSMEG_2321
MSMEG_3378 Beta-lactamase	MSMEG_0369 Uncharacterized protein
MSMEG_4683 Putative DNA glycosylase Mb2491c (EC 4.2.99.18) (Putative formamidopyrimidine-DNA glycosylase)	MSMEG_0368 Conserved hypothetical alanine and proline rich protein (Uncharacterized protein)
MSMEG_1287 Cyclase/dehydrase superfamily protein	MSMEG_1650 Methyltransferase type 11
MSMEG_1286 Sulfatase (EC 3.1.6.6) (Sulfatase family protein)	MSMEG_1651 Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine O-trans-acetylase) (HTA) (Homoserine transacetylase)
MSMEG_4686 Putative oxidoreductase YdbC (EC 1.-.-.-)	MSMEG_1652 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
MSMEG_0196 Putative dehydrogenase (Putative integron gene cassette protein) (EC 1.5.99.11)	MSMEG_1274 Gluconolactonase (EC 3.1.1.17)
MSMEG_4684 Ribose 5-phosphate isomerase (EC 5.3.1.6) (Ribose-5-phosphate isomerase B)	MSMEG_1317 Transcriptional regulator (Transcriptional regulator, GntR family)

Conditions

Bedaquiline.vs..DMSO.30min

KO_log.phase_rep1

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.4.of.6..negative.control

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.4.of.6..isoniazid.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

Wild.type.rep2.y

Wild.type.rep2.x

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

dcpA.knockout.rep1

Biological.replicate.2.of.7..falcarinol.treatment

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

X2.5..vs..50..air.saturation.Replicate.2

Biological.replicate.2.of.7..panaxydol.treatment

WT_stationary.phase_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.1.of.6..negative.control

Biological.replicate.2.of.6..negative.control

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..panaxydol.treatment

Comments