Module 661 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	0.61	4.1	74	28	20160204

Motifs

Motif 1
	e-value: 0.61
Motif 2
	e-value: 4.1

Module Plots

Members

MSMEG_5672 Citrate synthase	MSMEG_5501 Uncharacterized protein
MSMEG_3368 Uncharacterized protein	MSMEG_2098 5-carboxymethyl-2-hydroxymuconate Delta-isomerase (EC 5.3.3.10) (Fumarylacetoacetate hydrolase family protein)
MSMEG_2691 Acetyltransferase, gnat family protein	MSMEG_3737 Integral membrane protein
MSMEG_5912 Putative succinate-semialdehyde dehydrogenase [NADP(+)] (SSADH) (SSDH) (EC 1.2.1.79)	MSMEG_5136 Helix-turn-helix motif (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein)
MSMEG_5910 Glyoxalase/bleomycin resistance protein/dioxygenase (Quinone binding protein)	MSMEG_0794 Uncharacterized protein
MSMEG_2167 Aminopeptidase, putative (Peptidase M24) (EC 3.4.13.9)	MSMEG_2848 Major facilitator superfamily MFS_1 (Transmembrane efflux protein)
MSMEG_2677 Conserved large membrane protein	MSMEG_0819 Amidase, hydantoinase/carbamoylase (EC 3.5.1.87) (N-carbamoyl-L-amino acid amidohydrolase)
MSMEG_0578 Acyl-CoA dehydrogenase (Acyl-CoA dehydrogenase, middle domain protein)	MSMEG_0289 Alpha/beta hydrolase fold family protein
MSMEG_6336 Uncharacterized protein	MSMEG_5353 Putative methyltransferase
MSMEG_6334 ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein (Substrate-binding region of ABC-type glycine betaine transport system)	MSMEG_5354 Hydroxyneurosporene-O-methyltransferase (EC 2.1.1.38) (O-methyltransferase, family protein 2)
MSMEG_0450 Uncharacterized protein	MSMEG_1301 NanT3
MSMEG_2739 Conserved transmembrane alanine and glycine rich protein (Uncharacterized protein)	MSMEG_4965 Uncharacterized protein
MSMEG_3595 Uncharacterized protein	MSMEG_5960 O-antigen polymerase, putative
MSMEG_3596 AAA ATPase (ATPase)	MSMEG_2875 Alpha/beta hydrolase fold-3 (Esterase)

Conditions

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

Plogcy5plogcy3slide110norm

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

Biological.replicate.5.of.6..kanamycin.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.7.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.1.of.7..ethambutol.treatment

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.2

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

X4dbfcy5plogcy3slide480norm

WT.vs..DamtR.N.surplus_rep1

X3dbfcy5plogcy3slide601norm

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.2.of.7..ethambutol.treatment

WT_log.phase_rep1

X3dbfcy5plogcy3slide603norm

Biological.replicate.5.of.6..isoniazid.treatment

WT_stationary.phase_rep2

WT_stationary.phase_rep1

X4XR.rep1

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

Wild.type.rep3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_dyeswap_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DglnR.N_starvation_rep2

Wild.type.rep2.x

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

Sub.MIC.INH

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments