Module 24 Residual: 0.51Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.51	0.0055	33	75	31	20160204

Motifs

Motif 1
	e-value: 0.0055
Motif 2
	e-value: 33

Module Plots

Members

MSMEG_5328 Uncharacterized protein	MSMEG_0950 Uncharacterized protein
MSMEG_5559 Metabolite/sugar transport protein	MSMEG_6941 R3H domain-containing protein (Single-stranded nucleic acid binding R3H)
MSMEG_5469 Acetyltransferase, GNAT family protein	MSMEG_4104 Major facilitator superfamily MFS_1 (Transporter, major facilitator family protein)
MSMEG_6717 Oxidoreductase, Gfo/Idh/MocA family protein	MSMEG_3049 Uncharacterized protein
MSMEG_3353 Uncharacterized protein	MSMEG_6025 Uncharacterized protein
MSMEG_1861 Uncharacterized protein	MSMEG_0695 Isoniazid inductible protein IniA
MSMEG_2897 Uncharacterized protein	MSMEG_0183 Uncharacterized protein
MSMEG_6657 Alpha subunit of malonate decarboxylase (Malonate decarboxylase alpha subunit)	MSMEG_1542 Transcriptional regulator
MSMEG_2797 LysR family transcriptional regulator (LysR-family protein transcriptional regulator)	MSMEG_2200 Formyltetrahydrofolate deformylase (EC 3.5.1.10) (Formyl-FH(4) hydrolase)
MSMEG_4990 DNA-binding response regulator	MSMEG_5459 Uncharacterized protein
MSMEG_4992 Uncharacterized protein	MSMEG_6245 Chloramphenicol exporter (Chloramphenicol resistance protein)
MSMEG_2371 Low molecular weight protein antigen 6	MSMEG_4218 Possible conserved transmembrane protein (Putative conserved transmembrane protein)
MSMEG_5294 Uncharacterized protein	MSMEG_3585 MmpS2 protein
MSMEG_4182 Arabinose-proton symporter	MSMEG_1799 Transcriptional regulator (Transcriptional regulator LysR family)
MSMEG_2904 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein (MmcI protein)	MSMEG_0384 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) (dTDP-glucose pyrophosphorylase) (dTDP-glucose synthase)
MSMEG_1269 Diadenosine tetraphosphatase and related serine/threonine protein phosphatase (EC 3.6.1.41) (Ser/Thr protein phosphatase family protein)

Conditions

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

WT.vs..DamtR.without.N_rep2

dosR.WT_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

X2XR.rep1

Wild.type.rep3

Biological.replicate.2.of.6..kanamycin.treatment

Wild.type.rep2.y

Biological.replicate.7.of.7..falcarinol.treatment

Wild.type.rep1.y

DglnR_without.vs..with.N_rep2

Biological.replicate.3.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.1.of.6..negative.control

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.4.of.6..kanamycin.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

X3dbfcy5plogcy3slide603norm

Biological.replicate.2.of.6..isoniazid.treatment

WT_log.phase_rep2

WT.with.vs..without.N_dye.swap_rep1

Biological.replicate.2.of.7..ethambutol.treatment

WT_log.phase_rep1

DglnR_without.vs..with.N_rep1

X4dbfcy5plogcy3slide480norm

X2.5..vs..50..air.saturation.Replicate.2

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.5.of.6..negative.control

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.with.vs..without.N_rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.6.of.7..panaxydol.treatment

Comments