Module 98 Residual: 0.44
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.44 | 1.5e-22 | 0.000000000062 | 77 | 34 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 1.5e-22 | |
| Motif 2 |
 |
| e-value: 0.000000000062 |
| MSMEG_4371 Putative iron-sulfur oxidoreductase (EC 1.14.12.7) (Vanillate O-demethylase oxidoreductase) (EC 1.14.13.-) | MSMEG_0277 Aminotransferase class-III (Putative aminotransferase) (EC 2.6.1.-) |
| MSMEG_4372 Capreomycidine hydroxylase (Rieske (2Fe-2S) region) | MSMEG_6707 Uncharacterized protein |
| MSMEG_1683 Cytosine/purine/uracil/thiamine/allantoin permease family protein (Permease for cytosine/purines uracil thiamine allantoin) | MSMEG_3968 Uncharacterized protein |
| MSMEG_6931 RNA polymerase sigma-70 factor | MSMEG_4614 GAF family protein (Two component sensor histidine kinase Devs) |
| MSMEG_1180 Amidase, hydantoinase/carbamoylase (EC 3.5.1.87) (N-carbamoyl-L-amino acid hydrolase) | MSMEG_5504 Conserved secreted protein |
| MSMEG_0534 Major facilitator superfamily MFS_1 (Permease, major facilitator family protein) | MSMEG_5641 Glycosyl transferase, group 1 family protein |
| MSMEG_3448 Two-component system sensor kinase (Uncharacterized protein) | MSMEG_5249 Serine hydroxymethyltransferase (SHMT) (Serine methylase) (EC 2.1.2.1) |
| MSMEG_0533 Gp236 protein (Peptidoglycan-binding domain 1 protein) | MSMEG_1779 Uncharacterized protein |
| MSMEG_2251 Nitrate/nitrite response regulator protein (Response regulator receiver) (EC 2.7.13.3) | MSMEG_4383 Conserved transmembrane transport protein MmpL1 (MmpL5 protein) |
| MSMEG_0535 GntR-family protein transcriptional regulator | MSMEG_1053 Uncharacterized protein |
| MSMEG_2335 | MSMEG_0442 TetR family transcriptional regulator (Tetracyclin repressor, C-all-alpha domain protein) |
| MSMEG_2333 | MSMEG_0443 Hydrolase, carbon-nitrogen family protein |
| MSMEG_0279 Amino acid permease (Amino acid permease-associated region) | MSMEG_2176 Uncharacterized protein |
| MSMEG_1785 Uncharacterized protein | MSMEG_1179 Urocanate hydratase (Urocanase) (EC 4.2.1.49) (Imidazolonepropionate hydrolase) |
| MSMEG_1782 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100) | MSMEG_2248 Two-component system sensor kinase |
| MSMEG_1783 Uncharacterized protein | MSMEG_0613 Uncharacterized protein |
| MSMEG_1780 Natural resistance-associated macrophage protein (Uncharacterized protein) | MSMEG_0264 Transmembrane transport protein |
KO_stationary.phase_rep1
Bedaquiline.vs..DMSO.30min
Biological.replicate.5.of.7..falcarinol.treatment
WT.vs..DamtR.without.N_rep1
Wild.type.rep2.y
Biological.replicate.3.of.6..kanamycin.treatment
Biological.replicate.4.of.6..negative.control
Wild.type.rep2.x
Biological.replicate.5.of.6..isoniazid.treatment
X2XR.rep1
MB100pruR.vs..MB100..rep.3
dosR.WT_Replicate2
dosR.WT_Replicate1
KO_log.phase_rep2
KO_log.phase_rep1
Biological.replicate.7.of.7..falcarinol.treatment
Wild.type.rep1.y
MB100pruR.vs..MB100.rep.4
MB100pruR.vs..MB100.rep.2
DglnR_without.vs..with.N_rep2
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
Biological.replicate.1.of.7..ethambutol.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
X4XR.rep1
Biological.replicate.3.of.7..falcarinol.treatment
Biological.replicate.6.of.7..panaxydol.treatment
M..smegmatis.Acid.NO.treated
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.3.of.6..isoniazid.treatment
Biological.replicate.5.of.6..kanamycin.treatment
X3dbfcy5plogcy3slide601norm
X0.6..vs..50..air.saturation.Replicate.3
X0.6..vs..50..air.saturation.Replicate.5
WT.vs..DglnR.N_starvation_dye.swap_rep2
WT.vs..DamtR.N.surplus_rep1
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
mc2155.vs.Dcrp1.replicate.1
Biological.replicate.5.of.7..panaxydol.treatment
Biological.replicate.2.of.6..isoniazid.treatment
Biological.replicate.2.of.7..falcarinol.treatment
Plogcy5plogcy3slide111norm
X2.5..vs..50..air.saturation.Replicate.4
WT.with.vs..without.N_dye.swap_rep1
stphcy3plogcy5slide581norm
WT_log.phase_rep1
Biological.replicate.4.of.7..panaxydol.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.4
X2.5..vs..50..air.saturation.Replicate.2
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
mc2155.vs.Dcrp1.replicate.3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Slow.vs..Fast.Replicate.5
Biological.replicate.4.of.7..falcarinol.treatment
WT.vs..DglnR.N_starvation_dye.swap_rep1
Biological.replicate.6.of.7..ethambutol.treatment
Biological.replicate.7.of.7..panaxydol.treatment
X3dbfcy5plogcy3slide603norm
dosR.WT_Replicate3
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
WT.vs..DamtR.N.surplus_.dyeswap_rep1
WT.vs..DglnR.N_starvation_rep1
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
DglnR_without.vs..with.N_dyeswap_rep1
Sub.MIC.INH
BatchCulture_LBTbroth_StationaryPhase_Replicate3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.1.of.6..kanamycin.treatment
Comments
Log in to post comments