Module 113 Residual: 0.57
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.57 | 0.000000000017 | 0.000024 | 79 | 31 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 0.000000000017 | |
| Motif 2 |
 |
| e-value: 0.000024 |
| MSMEG_3311 Acyl carrier protein | MSMEG_6702 6-oxohexanoate dehydrogenase, succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.16) ([NADP+] succinate-semialdehyde dehydrogenase) |
| MSMEG_5468 Conserved transmembrane protein (Uncharacterized protein) | MSMEG_6701 Amino acid permease (Amino acid permease-associated region) |
| MSMEG_4645 Alpha oxoglutarate ferredoxin oxidoreductase, beta subunit | MSMEG_6700 Regulatory protein (Transcriptional regulator, GntR family) |
| MSMEG_4646 Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein (EC 1.2.7.3) (Pyruvate synthase) | MSMEG_6123 ABC transporter, membrane spanning protein (Binding-protein-dependent transport systems inner membrane component) (EC 3.6.3.24) |
| MSMEG_4738 Uncharacterized protein | MSMEG_6122 ABC transporter, membrane spanning protein (Binding-protein-dependent transport systems inner membrane component) (EC 3.6.3.23) |
| MSMEG_4712 Pyruvate dehydrogenase E1 component (Alpha subunit) PdhA (EC 1.2.4.1) (Pyruvate dehydrogenase E1 component, alpha subunit) (EC 1.2.4.1) | MSMEG_6121 Dipeptide transport ATP-binding protein DppD |
| MSMEG_4711 Pyruvate dehydrogenase E1 component (Beta subunit) PdhB (Pyruvate dehydrogenase E1 component subunit beta) (EC 1.2.4.1) | MSMEG_5473 Transporter |
| MSMEG_1005 Methyltransferase type 11 | MSMEG_5474 Universal stress protein family protein (UspA domain protein) |
| MSMEG_3539 Uncharacterized protein | MSMEG_6126 D-isomer specific 2-hydroxyacid dehydrogenase |
| MSMEG_2532 Dehydroquinase dehydratase, type II (EC 4.2.1.10) | MSMEG_6124 Extracellular solute-binding protein family 5 (Putative ABC transporter periplasmic oligopeptide-binding protein) |
| MSMEG_6315 Lipoprotein LpqH (Uncharacterized protein) | MSMEG_0935 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (BPG-dependent PGAM) (PGAM) (Phosphoglyceromutase) (dPGM) (EC 5.4.2.11) |
| MSMEG_0799 Uncharacterized protein | MSMEG_4707 Alpha/beta hydrolase fold protein (Non-heme bromoperoxidase BPO-A2) (EC 1.11.1.-) |
| MSMEG_6039 3-ketosteroid-9-alpha-hydroxylase reductase subunit (EC 1.17.1.-) (Rieske-type oxygenase) (RO) | MSMEG_4594 Uncharacterized protein |
| MSMEG_2412 Pyruvate carboxylase (EC 6.4.1.1) | MSMEG_4880 Methylmalonyl-CoA mutase C-terminal domain protein |
| MSMEG_6313 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (Guanine insertion enzyme) (tRNA-guanine transglycosylase) | MSMEG_5957 GDP-mannose 6-dehydrogenase AlgD (EC 1.1.1.132) |
| MSMEG_6120 Oligopeptide/dipeptide ABC transporter, ATPase subunit (EC 3.6.3.23) (Peptide transport system ATP-binding protein) |
KO_stationary.phase_rep1
Bedaquiline.vs..DMSO.30min
Biological.replicate.5.of.7..falcarinol.treatment
WT.vs..DamtR.without.N_rep1
Bedaquiline.vs..DMSO.15min
M..smegmatis.Acid.NO.treated
dosR.WT_Replicate4
dcpA.knockout.rep1
X2XR.rep1
dosR.WT_Replicate3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
KO_log.phase_rep2
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Plogcy5plogcy3slide110norm
Wild.type.rep1.y
MB100pruR.vs..MB100.rep.4
Biological.replicate.3.of.7..panaxydol.treatment
WT.vs..DamtR.without.N_.dyeswap_rep1
WT.vs..DamtR.without.N_.dyeswap_rep2
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.1.of.7..ethambutol.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep1
Bedaquiline.vs..DMSO..45min
Biological.replicate.6.of.7..panaxydol.treatment
Biological.replicate.1.of.6..negative.control
WT.vs..DglnR.N_starvation_dye.swap_rep2
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.3.of.6..isoniazid.treatment
WT_log.phase_rep2
X0.6..vs..50..air.saturation.Replicate.2
Slow.vs..Fast.Replicate.2
WT.vs..DamtR.N.surplus_rep1
Biological.replicate.5.of.6..kanamycin.treatment
Biological.replicate.7.of.7..panaxydol.treatment
Biological.replicate.1.of.7..panaxydol.treatment
mc2155.vs.Dcrp1.replicate.4
Biological.replicate.3.of.6..negative.control
Biological.replicate.5.of.7..panaxydol.treatment
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Sub.MIC.INH
Biological.replicate.2.of.7..falcarinol.treatment
stphcy5plogcy3slide580norm
X3dbfcy5plogcy3slide601norm
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
X3dbfcy3plogcy5slide607norm
WT_log.phase_rep1
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
X2.5..vs..50..air.saturation.Replicate.3
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
Biological.replicate.5.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.4
Slow.vs..Fast.Replicate.5
Biological.replicate.4.of.7..falcarinol.treatment
Biological.replicate.6.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.3
Biological.replicate.5.of.6..negative.control
X3dbfcy5plogcy3slide603norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
WT.vs..DamtR.N.surplus_.dyeswap_rep1
X4dbfcy3plogcy5slide903norm
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.vs..DamtR.N.surplus_dyeswap_rep2
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.1.of.6..kanamycin.treatment
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