Module 230 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	1.6e-19	0.0000043	81	31	20160204

Motifs

Motif 1
	e-value: 1.6e-19
Motif 2
	e-value: 0.0000043

Module Plots

Members

MSMEG_4375 3-oxoacyl-[acyl carrier protein] reductase (Short-chain dehydrogenase/reductase SDR)	MSMEG_0606 Putative transcriptional regulatory protein TetR (Transcriptional regulator, TetR family protein)
MSMEG_4376 3-oxoacyl-[acyl-carrier-protein] reductase (Short-chain dehydrogenase/reductase SDR)	MSMEG_6159 Probable cold shock protein A
MSMEG_4377 Amino acid permease family protein, putative (Amino acid permease-associated region)	MSMEG_2842 Nitrilotriacetate monooxygenase component A (EC 1.14.13.-) (Putative nitrilotriacetate monooxygenase)
MSMEG_2188 Integral membrane protein	MSMEG_3082 SOUL heme-binding protein (Soul heme-binding protein)
MSMEG_5657 Transcriptional regulator, LysR family (Transcriptional regulator, LysR family protein)	MSMEG_3472 Uncharacterized protein
MSMEG_5658 Epoxide hydrolase (EC 3.3.2.9)	MSMEG_3473 Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
MSMEG_5326 Uncharacterized protein	MSMEG_3471 GTP cyclohydrolase (EC 3.5.4.25)
MSMEG_6160 ATP-dependent rna helicase, dead/deah box family protein (DEAD/DEAH box helicase)	MSMEG_3474 Probable conserved integral membrane protein
MSMEG_6779 Uncharacterized protein	MSMEG_0612 Transcriptional regulator, TetR family protein (Transcriptional regulatory protein (Possibly TetR-family))
MSMEG_1553 Ethanolamine ammonia-lyase heavy chain (Ethanolamine ammonia-lyase, large subunit) (EC 4.3.1.7)	MSMEG_1252 Uncharacterized protein
MSMEG_1552 Ethanolamine permease	MSMEG_4849 Carveol dehydrogenase (EC 1.1.1.275) (Short-chain dehydrogenase/reductase SDR)
MSMEG_2066 Uncharacterized protein	MSMEG_1795 2-deoxy-scyllo-inosamine dehydrogenase (EC 1.1.1.-)
MSMEG_2067 Methyltransferase type 12	MSMEG_1796 Membrane protein (Uncharacterized protein)
MSMEG_2253 Uncharacterized protein	MSMEG_2913 Alpha/beta hydrolase fold protein (EC 3.8.1.5) (Hydrolase)
MSMEG_1554 Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	MSMEG_0386 NAD dependent epimerase/dehydratase family protein
MSMEG_0608 Glyoxalase family protein (Glyoxalase/bleomycin resistance protein/dioxygenase)

Conditions

Wild.type.rep1.y

KO_stationary.phase_rep1

KO_stationary.phase_rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.6..negative.control

X4XR.rep1

Biological.replicate.4.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.30min

WT.with.vs..without.N_dye.swap_rep1

Biological.replicate.1.of.6..negative.control

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep1

DglnR_without.vs..with.N_rep1

Biological.replicate.7.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep2

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

Sub.MIC.INH

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

dcpA.knockout.rep1

Biological.replicate.2.of.6..isoniazid.treatment

X3dbfcy5plogcy3slide601norm

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

X4XR.rep2

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.5.of.6..isoniazid.treatment

Slow.vs..Fast.Replicate.1

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide603norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

WT.vs..DamtR.N.surplus_dyeswap_rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

dosR.WT_Replicate2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

X4dbfcy3plogcy5slide903norm

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