Module 290 Residual: 0.49Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.49	0.000000000002	0.00094	71	22	20160204

Motifs

Motif 1
	e-value: 0.000000000002
Motif 2
	e-value: 0.00094

Module Plots

Members

MSMEG_3335 Transcriptional regulator, IclR family (Transcriptional regulator, IclR family protein, putative)	MSMEG_0603 Acyl-CoA dehydrogenase FadE6 (Putative acyl-CoA dehydrogenase)
MSMEG_6651 Uncharacterized protein	MSMEG_6923 Uncharacterized protein (Wyosine base formation)
MSMEG_0373 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Putative acetyl-COA acyltransferase Fada2 (3-ketoacyl-COA thiolase) (Beta-ketothiolase))	MSMEG_6922 Transporter, major facilitator family protein
MSMEG_5959 Uncharacterized protein	MSMEG_4613 Uncharacterized protein
MSMEG_4734 Uncharacterized protein	MSMEG_3297 Transcriptional regulator, CadC
MSMEG_4079 Alpha/beta hydrolase fold protein (Putative hydrolase)	MSMEG_6709 Cyclopentanol dehydrogenase (EC 1.1.1.163) (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.-)
MSMEG_6355 Uncharacterized protein	MSMEG_2483 Transcriptional regulator IclR (Transcriptional regulator, IclR family protein)
MSMEG_4733 Conserved hypothetical transmembrane protein (Putative membrane protein)	MSMEG_3340 Uncharacterized protein
MSMEG_1513 Uncharacterized protein	MSMEG_1982 Acyl-CoA synthase
MSMEG_2537 Transporter protein	MSMEG_1630 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (EC 1.1.1.-) (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_1514 Uncharacterized protein	MSMEG_0771 Putative oxidoreductase YqjQ (EC 1.-.-.-) (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.30)

Conditions

KO_stationary.phase_rep1

WT.vs..DglnR.N_starvation_rep2

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.5.of.7..panaxydol.treatment

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..negative.control

dosR.WT_Replicate4

Biological.replicate.4.of.6..isoniazid.treatment

MB100pruR.vs..MB100..rep.3

dosR.WT_Replicate2

Wild.type.rep2.y

Plogcy5plogcy3slide110norm

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

DglnR_without.vs..with.N_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.5.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

dcpA.knockout.rep2

Plogcy5plogcy3slide111norm

Biological.replicate.5.of.6..negative.control

X2.5..vs..50..air.saturation.Replicate.4

WT.with.vs..without.N_dye.swap_rep1

Biological.replicate.2.of.7..ethambutol.treatment

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X4dbfcy5plogcy3slide480norm

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

dosR.WT_Replicate3

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X3dbfcy5plogcy3slide603norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X2XR.rep2

WT.vs..DglnR.N_starvation_rep1

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

Biological.replicate.2.of.6..negative.control

Biological.replicate.3.of.6..negative.control

Comments