Module 352 Residual: 0.55
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.55 | 1e-22 | 0.017 | 76 | 28 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 1e-22 | |
| Motif 2 |
 |
| e-value: 0.017 |
| MSMEG_4609 Transcriptional regulator LysR family protein | MSMEG_4610 IgiC, putative |
| MSMEG_3260 LysR-family protein transcriptional regulator | MSMEG_4558 Uncharacterized protein |
| MSMEG_5831 Phosphoribosylformylglycinamidine synthase subunit PurQ (FGAM synthase) (EC 6.3.5.3) (Formylglycinamide ribonucleotide amidotransferase subunit I) (Glutaminase PurQ) (Phosphoribosylformylglycinamidine synthase subunit I) | MSMEG_1875 Sensor histidine kinase MtrB (EC 2.7.13.3) |
| MSMEG_5832 Phosphoribosylformylglycinamidine synthase subunit PurS (FGAM synthase) (EC 6.3.5.3) (Formylglycinamide ribonucleotide amidotransferase subunit III) (Phosphoribosylformylglycinamidine synthase subunit III) | MSMEG_1876 Lipoprotein LpqB |
| MSMEG_1539 Uncharacterized protein | MSMEG_4589 Rhodanese domain protein/cystathionine beta-lyase (Rhodanese-like protein) (EC 2.8.1.1) |
| MSMEG_1538 Uncharacterized protein | MSMEG_4587 Aliphatic sulfonates import ATP-binding protein SsuB (EC 3.6.3.-) |
| MSMEG_0707 Dimethylmenaquinone methyltransferase (Uncharacterized protein) | MSMEG_5824 Phosphoribosylformylglycinamidine synthase subunit PurL (FGAM synthase) (EC 6.3.5.3) (Formylglycinamide ribonucleotide amidotransferase subunit II) (Glutamine amidotransferase PurL) (Phosphoribosylformylglycinamidine synthase subunit II) |
| MSMEG_2790 Uncharacterized protein | MSMEG_5823 Conserved membrane-spanning protein (Uncharacterized protein) |
| MSMEG_4586 ABC nitrate/sulfonate/bicarbonate family protein transporter, periplasmic ligand binding protein (ABC-type transporter substrate-binding protein) | MSMEG_5821 Caax amino protease family protein |
| MSMEG_0771 Putative oxidoreductase YqjQ (EC 1.-.-.-) (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.30) | MSMEG_1299 2OG-Fe(II) oxygenase (Oxidoreductase, 2OG-Fe(II) oxygenase family protein) |
| MSMEG_2699 Putative alanine rich transferase (Uncharacterized protein) | MSMEG_5903 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100) |
| MSMEG_2698 Uncharacterized protein | MSMEG_4858 Transcriptional regulator, TetR family protein |
| MSMEG_0592 LacI-family transcriptional regulator (EC 5.1.1.1) (Putative rhamnose catabolism operon transcriptional regulator) | MSMEG_1210 Uncharacterized protein |
| MSMEG_4588 ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit | MSMEG_1211 Fatty acid desaturase (EC 1.14.19.3) |
KO_stationary.phase_rep2
WT.vs..DamtR.without.N_rep1
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
X4XR.rep1
Biological.replicate.3.of.7..ethambutol.treatment
M..smegmatis.Acid.NO.treated
dosR.WT_Replicate4
Biological.replicate.4.of.7..ethambutol.treatment
Biological.replicate.1.of.6..negative.control
MB100pruR.vs..MB100..rep.3
dosR.WT_Replicate2
KO_log.phase_rep2
WT.vs..DglnR.N_starvation_dye.swap_rep1
Plogcy5plogcy3slide110norm
MB100pruR.vs..MB100.rep.4
Biological.replicate.3.of.7..panaxydol.treatment
Biological.replicate.6.of.6..negative.control
WT.vs..DamtR.without.N_.dyeswap_rep2
Biological.replicate.1.of.6..kanamycin.treatment
Bedaquiline.vs..DMSO.60min
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
Wild.type.rep3
Biological.replicate.1.of.7..falcarinol.treatment
Biological.replicate.6.of.7..panaxydol.treatment
DamtR.with.vs..DamtR.without.N_.rep1
Biological.replicate.2.of.7..panaxydol.treatment
Biological.replicate.3.of.6..isoniazid.treatment
DamtR.with.vs..DamtR.without.N_.rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
mc2155.vs.Dcrp1.replicate.2
Plogcy5plogcy3slide113norm
mc2155.vs.Dcrp1.replicate.1
Biological.replicate.1.of.7..panaxydol.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.4
dcpA.knockout.rep1
Biological.replicate.2.of.7..falcarinol.treatment
Biological.replicate.2.of.6..isoniazid.treatment
X2.5..vs..50..air.saturation.Replicate.5
Biological.replicate.2.of.7..ethambutol.treatment
Biological.replicate.4.of.7..panaxydol.treatment
X4dbfcy5plogcy3slide480norm
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
X2.5..vs..50..air.saturation.Replicate.1
WT_stationary.phase_rep2
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
X4XR.rep2
mc2155.vs.Dcrp1.replicate.3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Slow.vs..Fast.Replicate.5
X2.5..vs..50..air.saturation.Replicate.3
Slow.vs..Fast.Replicate.1
Biological.replicate.6.of.7..ethambutol.treatment
Biological.replicate.3.of.7..falcarinol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
Biological.replicate.5.of.6..negative.control
X3dbfcy5plogcy3slide603norm
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
WT.vs..DamtR.N.surplus_.dyeswap_rep1
WT.vs..DglnR.N_starvation_rep1
WT.vs..DglnR.N_starvation_rep2
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
X2XR.rep2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
WT.vs..DamtR.N.surplus_dyeswap_rep2
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Sub.MIC.INH
BatchCulture_LBTbroth_StationaryPhase_Replicate2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
Biological.replicate.4.of.6..isoniazid.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Bedaquiline.vs..DMSO.120min
Comments
Log in to post comments