Module 383 Residual: 0.53Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.53	6.2e-32	0.000000000041	80	27	20160204

Motifs

Motif 1
	e-value: 6.2e-32
Motif 2
	e-value: 0.000000000041

Module Plots

Members

MSMEG_3373 Major facilitator superfamily protein MFS_1	MSMEG_0834 Putative tuberculin related peptide (Tuberculin related peptide)
MSMEG_3372 Transcriptional regulator, ArsR family (Transcriptional regulator, ArsR family protein)	MSMEG_2963 Bacterial extracellular solute-binding protein, family protein 5 (Extracellular solute-binding protein)
MSMEG_4917 Tetratricopeptide repeat domain protein (Thioredoxin)	MSMEG_1427 Transmembrane efflux protein
MSMEG_1430 Transcriptional regulator, TetR family protein	MSMEG_2309
MSMEG_4919 Uncharacterized protein	MSMEG_2308
MSMEG_1245 Phosphoadenosine phosphosulfate reductase	MSMEG_0082 Conserved membrane protein (Uncharacterized protein)
MSMEG_1244 Uncharacterized protein	MSMEG_0083 Membrane-anchored mycosin mycp1 (Peptidase S8 and S53, subtilisin, kexin, sedolisin)
MSMEG_1243 Uncharacterized protein	MSMEG_6300 Transcriptional regulator, GntR family protein
MSMEG_1242 Cysteine desulfurase IscS (EC 4.4.1.-) (NifS-like class-V aminotransferase, probable cysteine desulfurase) (EC 2.8.1.7)	MSMEG_6680 Integral membrane protein (Uncharacterized protein)
MSMEG_2868 Transcriptional regulator, PadR family (Transcriptional regulator, PadR family protein)	MSMEG_6681 Uncharacterized protein
MSMEG_2866 Thioesterase family protein (Thioesterase superfamily)	MSMEG_2172 Dicarboxylate carrier MatC domain protein (Dicarboxylate-carrier protein)
MSMEG_4204 Catalase (Uncharacterized protein)	MSMEG_2173 GntR-family protein transcriptional regulator (GntR-family transcriptional regulator)
MSMEG_0836 Putative glutamate--cysteine ligase 2-1 (EC 6.3.2.2) (Gamma-glutamylcysteine synthetase 2-1) (GCS 2-1) (Gamma-GCS 2-1)	MSMEG_1028 Geranylgeranyl reductase
MSMEG_0835 Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)

Conditions

KO_stationary.phase_rep1

Bedaquiline.vs..DMSO.30min

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

dcpA.knockout.rep2

Biological.replicate.4.of.6..negative.control

X4XR.rep1

Biological.replicate.4.of.7..ethambutol.treatment

MB100pruR.vs..MB100..rep.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

dosR.WT_Replicate1

KO_log.phase_rep2

KO_log.phase_rep1

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Wild.type.rep1.x

DglnR_without.vs..with.N_rep1

MB100pruR.vs..MB100.rep.4

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.1.of.6..isoniazid.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

Biological.replicate.3.of.7..ethambutol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.2.of.6..isoniazid.treatment

Sub.MIC.INH

Biological.replicate.2.of.7..falcarinol.treatment

WT_log.phase_rep2

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.2.of.6..negative.control

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Slow.vs..Fast.Replicate.1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

Wild.type.rep3

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.N.surplus_dyeswap_rep2

Biological.replicate.1.of.6..negative.control

DglnR_without.vs..with.N_dyeswap_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

dosR.WT_Replicate2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments